View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_16 (Length: 360)
Name: NF16578_low_16
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 99 - 344
Target Start/End: Complemental strand, 31364068 - 31363821
Alignment:
| Q |
99 |
tgcatgcaatctacggtgaaactattacaaaaatgaaaaatatacgatataatcgaatagatcatccaaaaataaatggaccataggacacatgcaaatt |
198 |
Q |
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| T |
31364068 |
tgcatgcaatctacggtgaaactattacaaaaatgaaaaatatacgatataatcgaatagatcatccaaaaagaaatggaccataggacacatgcaaatt |
31363969 |
T |
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| Q |
199 |
ttccaaaaattaaatctcaatgaccattttgtctaagacaaaacacgagacctatcttgcatagtctttgtcaatgaaaccttttgtgtagctcaagttt |
298 |
Q |
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| T |
31363968 |
ttccaaaaattaaatctcaatgaccattttgtctaggacaaaacacgagacctatcttgcatagtctttgtcaatgaaaccttttgtgtagctcaagttt |
31363869 |
T |
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| Q |
299 |
cttggtg--tatatatcctccttagtgttagctagtaaaggtgacaac |
344 |
Q |
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| T |
31363868 |
cttggtggatatatatcctccttagtgttagctagtaaaggtgacaac |
31363821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31364447 - 31364339
Alignment:
| Q |
1 |
tcatatggtagta-taagcacaactaattctggtcgctggccaatatgctttctagaaacatgaaagtgctcatacctgaattgcgtaggacatagccat |
99 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31364447 |
tcatatggtagtactaagcacaactaattctggtcgctgcccaatatgctttctagaaacatgaaagtgttcatacctgaattgcgtaggacatagccat |
31364348 |
T |
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| Q |
100 |
gcatgcaat |
108 |
Q |
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| T |
31364347 |
gcatgcaat |
31364339 |
T |
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