View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_17 (Length: 357)
Name: NF16578_low_17
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 36031254 - 36031612
Alignment:
| Q |
1 |
cacatctcatgaataagtgcaaagtcgtttcctcaatgttgtcacacaaattatctaaagacatcttgaggctcaatgataaactccccaatgaaat--- |
97 |
Q |
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| T |
36031254 |
cacatctcatgaataagtgcaaagtcgtttcctcaatgttgtcacacaaattatcaaaagacatcttgaggttcaatgataaactccccaatgaaataag |
36031353 |
T |
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| Q |
98 |
-----------tagtaggaattattcttatctaaaaagaagctatactgatgaaaatcaattacctaagatggtgtaaaactagagaattgctttttcaa |
186 |
Q |
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| T |
36031354 |
ttagaattatttagtaggaattattcttatctaaaaagaagctatactgatgaaaatcaattacctaagatggtgtaaaactagagaattgctttttcaa |
36031453 |
T |
|
| Q |
187 |
cacaaattactctcaacctaaaaggcttctcccaagaagtttaccttcatggaaaacataggccgatttcaccgagaaacctataccggtatctggcgcc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36031454 |
cacaaattactctcaacctaaaaggcttctcccaagaagtttaccttcatggaaaacataggccgatttcaccgagaaacctataccggtatccggcgcc |
36031553 |
T |
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| Q |
287 |
tccattccttgaccttccacatgaaatatagaaactaaattcataagttttgtggccta |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031554 |
tccattccttgaccttccacatgaaatatagaaactaaattcataagttttgtggccta |
36031612 |
T |
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