View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_18 (Length: 356)
Name: NF16578_low_18
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 44565583 - 44565903
Alignment:
| Q |
18 |
ctttgatggaataattggaactaaggttgctgataatgtttctatatcaattttcagaaattcaaacatataatgaaggagctgcaaggggctataatta |
117 |
Q |
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| T |
44565583 |
ctttgatggaataattggaactaaggttgctgataatgtttctatatcaattttcagaaattcaaacatataatgaaggagctgcaaggggctataatta |
44565682 |
T |
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| Q |
118 |
ttggatcagcttttcaaactctccttggttatactggtcttatgtctctgttagtaaggtatggttttggggannnnnnnnnncctggctttttagttgc |
217 |
Q |
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| T |
44565683 |
ttggatcagcttttcaaactctccttggttatactggtcttatgtctctgttagtaaggtatggttttggggattttttttttcctggctttttagttgc |
44565782 |
T |
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| Q |
218 |
ctttaacgcaggcttcattgtttaatcaaaaacatttattcctgtggattgaggcaatacataatgtaggtaactgctaatggttgaaaaattcaagtag |
317 |
Q |
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| T |
44565783 |
ctttaacgcaggcttcattgtttcatcaaaaacatttattcctgtggattgaggcaatacataatgtaggtaactgctaatggttgaaaaattcaagtag |
44565882 |
T |
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| Q |
318 |
aatcatagcagattatgctga |
338 |
Q |
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| T |
44565883 |
aatcatagcagataatgctga |
44565903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 36035207 - 36035045
Alignment:
| Q |
18 |
ctttgatggaataattggaactaaggttgctgataatgtttctatatcaattttcagaaattcaaacatataatgaaggagctgcaaggggctataatta |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
36035207 |
ctttgacggaataattggaactaaggttgctgataatgttttgatatcaattttcagaaattccgacatataatgaaggagctgcagggggctataatta |
36035108 |
T |
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| Q |
118 |
ttggatcagcttttcaaactctccttggttatactggtcttatgtctctgttagtaaggtatg |
180 |
Q |
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| T |
36035107 |
ttggatctgcttttcaaactttccttggatatactggacttatgtcactgttagtaaggtatg |
36035045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 36034980 - 36034903
Alignment:
| Q |
260 |
tgtggattgaggcaatacataatgtaggtaactgctaatggttgaaaaattcaagtagaatcatagcagattatgctg |
337 |
Q |
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| T |
36034980 |
tgtggattgaggcaatacataatgtaggtaactcctagtggttgagagattcaagtaaaactatagcagataatgctg |
36034903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 20120728 - 20120849
Alignment:
| Q |
64 |
tcaattttcagaaattcaaacatataatgaaggagctgcaaggggctataattattggatcagcttttcaaactctccttggttatactggtcttatgtc |
163 |
Q |
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||||||| ||||||||||| |||||||||| |||||| || ||||||||||||||||| || || |||||| |||| ||||| ||||| || |||||||| |
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| T |
20120728 |
tcaatttgcagaaattcaagcatataatgagggagcttcagggggctataattattgggtccgcctttcaagctctacttggatataccggacttatgtc |
20120827 |
T |
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| Q |
164 |
tctgttagtaaggtatggtttt |
185 |
Q |
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|| ||||||||||||| |||| |
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| T |
20120828 |
actcttagtaaggtatgatttt |
20120849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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