View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_19 (Length: 352)
Name: NF16578_low_19
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 41963844 - 41963524
Alignment:
| Q |
16 |
atgacatagctgcaatcaagttcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattcttgaaagtatcactctccc |
115 |
Q |
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| T |
41963844 |
atgacatagctgcaatcaaattcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattcttgaaagtatcactctccc |
41963745 |
T |
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| Q |
116 |
aataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaaagggaacaagagatgatatcactagcaggctcaactttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963744 |
aataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaaagggaacaagagatgatatcactagcaggctcaactttt |
41963645 |
T |
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| Q |
216 |
caatatggaatatcctcaaattcaagtaggatacaattacaaggttaccctttaatgcagtttgaacaacatgcacaacaaaacctatatgatagtagta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963644 |
caatatggaatatcctcaaattcaagtaggatacaattacaaggttaccctttaatgcagtttgaacaacatgcacaacaaaacctatatgatagtagta |
41963545 |
T |
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| Q |
316 |
ctcaagatacaacgtcgtttg |
336 |
Q |
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| T |
41963544 |
ctcaagatacaacgtcgtttg |
41963524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 24561715 - 24561557
Alignment:
| Q |
18 |
gacatagctgcaatcaagttcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattcttgaaagtatcactctcccaa |
117 |
Q |
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|||||||| ||||| || ||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||| | ||| || |||| |
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| T |
24561715 |
gacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttacgacgtgaaagccattctcgaaagcaacacactgccaa |
24561616 |
T |
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| Q |
118 |
taggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaa |
176 |
Q |
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| T |
24561615 |
ttggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaa |
24561557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 53233878 - 53233820
Alignment:
| Q |
27 |
gcaatcaagttcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgt |
85 |
Q |
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|||||||| || |||||| |||| ||||||||||| |||||||||| ||| |||||||| |
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| T |
53233878 |
gcaatcaaatttagaggactaaatgcagtaacaaattttgacatgagtcggtacgacgt |
53233820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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