View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_21 (Length: 346)
Name: NF16578_low_21
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 29858080 - 29858381
Alignment:
| Q |
16 |
gactaggcgaatcaagttctccattttgttttaactctcgggttttcagaagaaaatgtttgataatcctgagttcgaccagaaggtactggcgagagtg |
115 |
Q |
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| T |
29858080 |
gactaggcgaatcaagttctccattttgttttaactctcgggttttcagaagaaaatgtttgataatcctgagttcgaccagaaggtactggcgagagtg |
29858179 |
T |
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| Q |
116 |
ttgagtatgtttaagatgtttgaaaataatttgtttgttaaagttggaagatgtttaatttgaatgaagaaggtttggaggttgagaaagagagagagga |
215 |
Q |
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| T |
29858180 |
ttga-------------------aaatattttgtttgttaaagttggaagaggtttgatttgaatgaagaaggtttggaggttgagaaagagagagagga |
29858260 |
T |
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| Q |
216 |
actaaggttgagaattgagcatgtgagtttggaatgaatggagagggaaggggggtagagggacttaaatagaggatttaggtgtatgatgaaggggaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29858261 |
actaaggttgagaattgagcatgtgagtttggaatgaatggagagggaaggggggtagagggacttaaatagaggatttaggtgtatgatgaaggggaga |
29858360 |
T |
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| Q |
316 |
gttaatgtgctttttcctttg |
336 |
Q |
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||||||||||||||||||||| |
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| T |
29858361 |
gttaatgtgctttttcctttg |
29858381 |
T |
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