View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_22 (Length: 346)
Name: NF16578_low_22
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 1610173 - 1610511
Alignment:
| Q |
1 |
caagtcataccttgttatctccatttcttaggtattccaaacaatgttgaacaacatgatttccattattgtcttttatgagaatcaagaatcctggttc |
100 |
Q |
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| T |
1610173 |
caagtcataccttgttatctccatttcttaggtattccaaacaatgttgaacaacatgatttccattattgtcttttatgagaatcaagaatcctggttc |
1610272 |
T |
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| Q |
101 |
aagagctgatacaactaatgaaacttgttgcttagttttgagagtctcgatcagcttctgcacaacacgagtgttgtgggaaggagagaacaatgaggtc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1610273 |
aagagctgatacgactaatgaaacttgttgcttagttttgagagtctcgatcagcttctgcacaacacgagtgctgtgggaaggagagaacaatgaggtc |
1610372 |
T |
|
| Q |
201 |
aagttcagcattagataataagtacattatttcatattaattataaaatagttgcatgactacccgtgagtatttaacgagattctgacaagctgccccg |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1610373 |
aagttcaacattagataataagtacattatttcatattagttataaaatagttgcatgactacccgtgagtatttaacgagattctgacaagctgccccg |
1610472 |
T |
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| Q |
301 |
gctcctggataaccatcagtattgtctgcatcctatgct |
339 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||| |
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| T |
1610473 |
gctcctggataaccatcagtatgatctgcatcctctgct |
1610511 |
T |
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