View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16578_low_23 (Length: 345)

Name: NF16578_low_23
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16578_low_23
NF16578_low_23
[»] chr1 (4 HSPs)
chr1 (1-341)||(29820423-29820764)
chr1 (222-314)||(33717198-33717289)
chr1 (252-318)||(6263001-6263067)
chr1 (272-304)||(1498034-1498066)
[»] chr3 (2 HSPs)
chr3 (156-268)||(54644107-54644220)
chr3 (137-192)||(30421616-30421672)
[»] chr4 (1 HSPs)
chr4 (140-201)||(2888795-2888857)
[»] chr8 (2 HSPs)
chr8 (165-205)||(5455862-5455902)
chr8 (272-316)||(5055885-5055929)
[»] chr5 (4 HSPs)
chr5 (136-187)||(6522154-6522207)
chr5 (138-187)||(38726790-38726840)
chr5 (272-313)||(10839203-10839244)
chr5 (259-316)||(39513618-39513675)
[»] chr6 (2 HSPs)
chr6 (167-252)||(32996847-32996932)
chr6 (167-239)||(33965970-33966042)
[»] chr2 (1 HSPs)
chr2 (272-316)||(29363198-29363242)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 29820764 - 29820423
Alignment:
Q  1 agatggcaggtgtatcctctgactctccagtgtaagtactatccttattagtgctaaaatgtttaa-tgtgtagatgtctcctctaactttttagctaaa 99  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  29820764 agatggcaggtgtatcctctgactctccggtgtaagtactatccttattagtgctaaaatgtttaaatgtgtagatatctcctctaacttttcagctaaa 29820665  T
Q  100 gaaaatatacatgatagaaaattctataaagaaattgtagtatttaaacacgatttgtaatctgtaacctaagtttgaataatagaaaatcacagcagcc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29820664 gaaaatatacatgatagaaaattctataaagaaattgtagtatttaaatacgatttgtaatctgtaacctaagtttgaataatagaaaatcacagcagcc 29820565  T
Q  200 actctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatctttgtgtattctctatttccctttttcgtatctgttttcttttaaacca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29820564 actctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatctttgtgtattctctatttcccttttttgtatctgttttcttttaaacca 29820465  T
Q  300 gggttgttgctctaacagtttcaatgtataggtatctctctc 341  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  29820464 gggttgttgttctaacagtttcaatgtataggtatctctctc 29820423  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 33717289 - 33717198
Alignment:
Q  222 cacaattggtcgaactccgttgtcaaatctttgtgtattctctatttccctttttcgtatctgttttcttttaaaccagggttgttgctctaa 314  Q
    ||||||||||||| |||| |  ||||||||| |||| |||||| ||| | |||||||||||||||| ||||| ||| |||||||||| |||||    
T  33717289 cacaattggtcgagctccttgatcaaatctt-gtgtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa 33717198  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 6263001 - 6263067
Alignment:
Q  252 ttgtgtattctctatttccctttttcgtatctgttttcttttaaaccagggttgttgctctaacagt 318  Q
    |||||| |||||| ||| | |||||||||||| ||||||||| ||||||| |||||| |||||||||    
T  6263001 ttgtgtgttctctgtttgcgtttttcgtatctattttcttttgaaccaggattgttgttctaacagt 6263067  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 1498034 - 1498066
Alignment:
Q  272 tttttcgtatctgttttcttttaaaccagggtt 304  Q
    |||||||||||||||||||||| ||||||||||    
T  1498034 tttttcgtatctgttttcttttgaaccagggtt 1498066  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 54644107 - 54644220
Alignment:
Q  156 gtaatctgtaac--ctaagtttgaataatagaaaatcacagcagccactctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatcttt 253  Q
    ||||||||||||  ||||| ||||||||||||||||||| |||||||||||  ||| ||||||| || |||||||||| ||| ||| |  ||||||  ||    
T  54644107 gtaatctgtaactcctaagcttgaataatagaaaatcactgcagccactctaaagtcagagacataggcacaattggttgaaatccatgatcaaat-att 54644205  T
Q  254 gtgtattctctattt 268  Q
    |||| ||||||||||    
T  54644206 gtgtgttctctattt 54644220  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 30421616 - 30421672
Alignment:
Q  137 tagtatttaaacacgatttgtaatctgtaacct-aagtttgaataatagaaaatcac 192  Q
    ||||||||||||||   |||||||||||||| | ||| |||||||||||||||||||    
T  30421616 tagtatttaaacacatgttgtaatctgtaactttaagcttgaataatagaaaatcac 30421672  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 2888857 - 2888795
Alignment:
Q  140 tatttaaacacgatttgtaatctgtaac-ctaagtttgaataatagaaaatcacagcagccac 201  Q
    ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||  ||||||||    
T  2888857 tatttaaacacaagttgtaatctgtaactctaagcttgaataatagaaaatcattgcagccac 2888795  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 5455862 - 5455902
Alignment:
Q  165 aacctaagtttgaataatagaaaatcacagcagccactctg 205  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  5455862 aacctaagtttgaataatagaaaatcaccgcaaccactctg 5455902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 5055885 - 5055929
Alignment:
Q  272 tttttcgtatctgttttcttttaaaccagggttgttgctctaaca 316  Q
    |||||||||||| ||| ||||| |||||||||||||| |||||||    
T  5055885 tttttcgtatctttttacttttgaaccagggttgttgttctaaca 5055929  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 6522207 - 6522154
Alignment:
Q  136 gtagtatttaaacacgatttgtaatctgtaa--cctaagtttgaataatagaaa 187  Q
    ||||||||||||||| | ||||||| |||||  |||||||||||||||||||||    
T  6522207 gtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaa 6522154  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 38726840 - 38726790
Alignment:
Q  138 agtatttaaacacgatttgtaatctgtaacc-taagtttgaataatagaaa 187  Q
    ||||||||||||| | ||||||||| ||||| |||||||||||||||||||    
T  38726840 agtatttaaacacaagttgtaatctctaaccctaagtttgaataatagaaa 38726790  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 10839203 - 10839244
Alignment:
Q  272 tttttcgtatctgttttcttttaaaccagggttgttgctcta 313  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  10839203 tttttcgtatctgttttctcttgaaccagggttgttgttcta 10839244  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 39513618 - 39513675
Alignment:
Q  259 ttctctatttccctttttcgtatctgttttcttttaaaccagggttgttgctctaaca 316  Q
    |||||| ||| | |||||||||||||||| ||||| | | ||||||||||||||||||    
T  39513618 ttctctgtttgcgtttttcgtatctgtttgcttttgatctagggttgttgctctaaca 39513675  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 32996932 - 32996847
Alignment:
Q  167 cctaagtttgaataatagaaaatcacagcagccactctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatctt 252  Q
    ||||||||||||| |||||||||||| ||| | ||||| ||||  |||||| || ||||| | |||||||| |||  |||||||||    
T  32996932 cctaagtttgaattatagaaaatcactgcaacgactctatagtcggagacataggcacaactagtcgaacttcgtgatcaaatctt 32996847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 33966042 - 33965970
Alignment:
Q  167 cctaagtttgaataatagaaaatcacagcagccactctgtagtaagagacaaagacacaattggtcgaactcc 239  Q
    |||||| ||||||||| ||||||||  | |||| |  |||||||||||| |||||||||||||  ||||||||    
T  33966042 cctaagcttgaataatcgaaaatcaatgtagcctcaatgtagtaagagataaagacacaattgaccgaactcc 33965970  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 29363198 - 29363242
Alignment:
Q  272 tttttcgtatctgttttcttttaaaccagggttgttgctctaaca 316  Q
    ||||||||||| |||| ||||| |||||||||||||| |||||||    
T  29363198 tttttcgtatccgtttacttttgaaccagggttgttgttctaaca 29363242  T

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