View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_25 (Length: 327)
Name: NF16578_low_25
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 32597015 - 32596754
Alignment:
| Q |
19 |
tttagagtgatacatcttatgtatacattgagcacttgtacaaattgtaatctctccatttaactaggagagagggtggacaccttatacactattttat |
118 |
Q |
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| T |
32597015 |
tttagagtgatacatcttatgtatacattgagcacttgtacaaattgtaatttctccatgtaactaggagagagggtggacaccatatacactattttat |
32596916 |
T |
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| Q |
119 |
accacagactgagactacatttacaccctttcaagcaactaaacaaggagagagggtgagaccgtagaatggggtttccagcaaacattatccaacttgg |
218 |
Q |
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| T |
32596915 |
accacagactgagactacatttacaccctt-caagcaactaaacaaggagacagggtgagaccgtagaatggggtttccagcaaacattatccaacttgg |
32596817 |
T |
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| Q |
219 |
tattgagtagacttgacatattttgcaatgtattcttcaagtcgaactcaaaatataacaacg |
281 |
Q |
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| T |
32596816 |
tattgagtagacatgacatattttgcaatgtattcttcaagtcgaactcaaaatataacaacg |
32596754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 32667189 - 32667147
Alignment:
| Q |
211 |
caacttggtattgagtagacttgacatattttgcaatgtattc |
253 |
Q |
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| T |
32667189 |
caactttgtattgtgtagacttgacatattttgtaatgtattc |
32667147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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