View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16578_low_27 (Length: 312)
Name: NF16578_low_27
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 158 - 309
Target Start/End: Original strand, 36605754 - 36605905
Alignment:
| Q |
158 |
catgttaatataggtagttaaaatacatatatattgggaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag |
257 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36605754 |
catgttaatgtaggtagttaaaatacatatatactgtaaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag |
36605853 |
T |
|
| Q |
258 |
attgtagaatcaaaatgatgttccactatttgattgagattcatttcagtcg |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
36605854 |
attgtagaatcaaaatgatgttttactatttgattgagattcagttcagtcg |
36605905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 32649746 - 32649635
Alignment:
| Q |
194 |
ggaattgaatagagtaaattaatataggcaaatgggggaaaa-tttgaggaatgaaaactaatagattgtagaatcaaaatgatgttccactatttgatt |
292 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||| || ||||||| |
|
|
| T |
32649746 |
ggaatggaagagagttaattaatataggcaaatgtgggaaaaatttgaggaatgaaaactaatagattatagaatgaaaattatgttcc-ctgtttgatt |
32649648 |
T |
|
| Q |
293 |
gagattcatttca |
305 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
32649647 |
gacattcagttca |
32649635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University