View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_28 (Length: 310)
Name: NF16578_low_28
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 38983155 - 38983446
Alignment:
| Q |
16 |
aaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattcgaggaagacaaccctgttt |
115 |
Q |
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| T |
38983155 |
aaaagatttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattagaggaagacaaccctgttt |
38983254 |
T |
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| Q |
116 |
gagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcagagcagatgttttggaattttttccagagttcttgtggatgtggacctat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38983255 |
gagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcatagcagacgttttgggattttttccagagttcttgtggatgtggacctat |
38983354 |
T |
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| Q |
216 |
ctgagcagctctttgaaactgttgttgtggaaagggaagatcacgctctgtccattgatgtcttttatgataagcatccttccttctgtgct |
307 |
Q |
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| T |
38983355 |
ctgagcagctctttgaaactgttgttgtggaaagggaagatcatgctctgtccattgatgtcttttatgagaagcatccttccttctgtgct |
38983446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 38834885 - 38834936
Alignment:
| Q |
44 |
caaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatatt |
95 |
Q |
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| T |
38834885 |
caaactcatgcgcaaatttgggtccggctgatgcacctaccccaggaatatt |
38834936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 51523425 - 51523559
Alignment:
| Q |
22 |
tttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattcgaggaagacaaccctgtttgagatt |
121 |
Q |
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| T |
51523425 |
tttcaagcctcaagctcaagtgcaaactcatgcccaaatttgggttaggctcatgcatttacctcaagaatattggagaaaaacaactttgtttgagatt |
51523524 |
T |
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| Q |
122 |
gcttcaggcttaggtacccctcttgcaattgatga |
156 |
Q |
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| T |
51523525 |
tcctctggattgtgtacccctctttccattgatga |
51523559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 28103096 - 28102963
Alignment:
| Q |
23 |
ttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattcgaggaagacaaccctgtttgagattg |
122 |
Q |
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| T |
28103096 |
ttcaaaccccaagctcaagtgcgaacccatgctcagatttgggttagacttatgcattttcctcaagaatattggaggaagagaaccctttttgagattg |
28102997 |
T |
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| Q |
123 |
cttcaggcttaggtacccctcttgcaattgatga |
156 |
Q |
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| T |
28102996 |
cttatggtttaggcactcctcttgctattgatga |
28102963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 36904905 - 36905038
Alignment:
| Q |
23 |
ttcaagcctcaagctcaaatgcaaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattcgaggaagacaaccctgtttgagattg |
122 |
Q |
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||||| || |||||||| ||||||| |||||||| |||||||| | | ||||| || || |||||||||| ||||||||| |||| |||||||||| |
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| T |
36904905 |
ttcaaaccccaagctcaggtgcaaacccatgctcagatttgggttatacttatgcatttgcctcaagaatattggaggaagacggccctttttgagattg |
36905004 |
T |
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| Q |
123 |
cttcaggcttaggtacccctcttgcaattgatga |
156 |
Q |
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| T |
36905005 |
ctttcggtttaggcactcctcttgctattgatga |
36905038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 22754029 - 22753969
Alignment:
| Q |
44 |
caaactcatgctcaaatttgggtcaggttgatgcacttaccccaagaatattcgaggaaga |
104 |
Q |
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||||||||||| |||||||||||| | |||||||| ||||| || ||||||| ||| |||| |
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| T |
22754029 |
caaactcatgcgcaaatttgggtccgattgatgcatttacctcaggaatattggagaaaga |
22753969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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