View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_3 (Length: 507)
Name: NF16578_low_3
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 33071563 - 33072051
Alignment:
| Q |
18 |
ctaagtacttactagttactaggagcaatagaactcgttattgtagctatggatatagttgaatatcatgatgattgaatatgattatgatgtatgaaat |
117 |
Q |
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| T |
33071563 |
ctaagtacttactagttactaggagcaatagaactcgttattgtagctatggatatagttgaatatcatgatgattgaatatgattatgatgtatgaaat |
33071662 |
T |
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| Q |
118 |
gtagatgtgggttcaaacttcaaattaat----gtagtttgaggttgaagagtcaaactgtggtgatctagttcccgtgttttgcggagttggcccacca |
213 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33071663 |
gtagatgtaggttcaaacttcaaattaattaatgtagtttgaggttgaagagtcaaactgtggtgatctagttcccgtgttttgcggagttggcccacca |
33071762 |
T |
|
| Q |
214 |
tgtcaaagacatcttcacaccattaatccgacttggtctatcctacccacatatgccacgcaatagagtgtaatgagagctgcttcttcgtcttgttgct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33071763 |
tgtcaaagacatcttcacaccattaatccgacttggtctatcctac----atatgccacgcaatagagtgtaatgagagctgcttcttcgtcttgttgct |
33071858 |
T |
|
| Q |
314 |
actaat----atgattaactatgtggtcagcgcaacattaattaacttaaacttctcattcaaaatgggagtatataatctaatttaatttaatccatgc |
409 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33071859 |
actaattaatatgattaactatgtggtcagcgcaacattaattaacttaaacttctcattcaaaatgggagtatataatctaatttaatttaatccatgc |
33071958 |
T |
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| Q |
410 |
ttcccaacatggtcgacatgcatggtggtgattggagggcagtctttcctaacggttattggaggttagtccttttgctaagtttcatctcac |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33071959 |
ttcccaacatggtcgacatgcatggtggtgattggagggcagtctttcctaacggttattggaggttagtccttttgctaagtttcatttcac |
33072051 |
T |
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