View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_30 (Length: 303)
Name: NF16578_low_30
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 27062714 - 27062456
Alignment:
| Q |
20 |
cgttcatgttcagaaccggaggtggtgctgtttttctcatgttcttcctcttcttcttcctcgcaaacatcaacttcttttccgacagaaccatgctgaa |
119 |
Q |
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| T |
27062714 |
cgttcatgttcagaaccggaggtggtgctgtttttctcatgttcttcctcttcttcttcctcgcaaacatcaacttcttttccgacagaaccatgctgaa |
27062615 |
T |
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| Q |
120 |
attcaccgttggaaaaatcaagcaagtcgtcgacagaaaaatcttctccgacaacaacgttgtttgcattcaaacacaaaatctcttcgcaaattgtttg |
219 |
Q |
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| T |
27062614 |
attcaccgttggaaaaatcaagcaagtcgtcgacagaaaaatcttctccgacaacaacgttgtttgcattcaaacacaaaatctcttcgcaaattgtttg |
27062515 |
T |
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| Q |
220 |
ttggaaaatagattctgtcctcaaacttggtttcaacgcttccgctacaacaacttcca |
278 |
Q |
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| T |
27062514 |
ttggaaaatagattctgtcctcaaacttggtttcaacgcttccgctacaacaacttcca |
27062456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 27083819 - 27083561
Alignment:
| Q |
20 |
cgttcatgttcagaaccggaggtggtgctgtttttctcatgttcttcctcttcttcttcctcgcaaacatcaacttcttttccgacagaaccatgctgaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083819 |
cgttcatgttcagaaccggaggtggtgctgtttttctcatgttcttcctcttcttcttcctcgcaaacatcaacttcttttccgacagaaccatgctgaa |
27083720 |
T |
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| Q |
120 |
attcaccgttggaaaaatcaagcaagtcgtcgacagaaaaatcttctccgacaacaacgttgtttgcattcaaacacaaaatctcttcgcaaattgtttg |
219 |
Q |
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| T |
27083719 |
attcaccgttggaaaaatcaagcaagtcgtcgacagaaaaatcttctccgacaacaacgttgtttgcattcaaacacaaaatctcttcgcaaattgtttg |
27083620 |
T |
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| Q |
220 |
ttggaaaatagattctgtcctcaaacttggtttcaacgcttccgctacaacaacttcca |
278 |
Q |
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| T |
27083619 |
ttggaaaatagattctgtcctcaaacttggtttcaacgcttccgctacaacaacttcca |
27083561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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