View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_36 (Length: 260)
Name: NF16578_low_36
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29857985 - 29857743
Alignment:
| Q |
1 |
gtcttaagcaacaaggagtacccttcatggtgcttgaaagagcaaattgcatagcttcactatggcaaaaaagaacatacgacagattaaaacttcacct |
100 |
Q |
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| T |
29857985 |
gtcttaagcaacaaggagtacccttcatggttcttgaaagatcaaattgcatagcttcactatggcaaaaaagaacatatgacagattaaaacttcacct |
29857886 |
T |
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| Q |
101 |
ccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcg |
200 |
Q |
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| T |
29857885 |
ccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcg |
29857786 |
T |
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| Q |
201 |
aaacactttgaaatcaacccgcgattcaacgagtgtgttcaat |
243 |
Q |
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| T |
29857785 |
aaacactttgaaatcaacccgcgattcaacgagtgtgttcaat |
29857743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 2136154 - 2136074
Alignment:
| Q |
46 |
attgcatagcttcactatggcaaaaaagaacatacgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
126 |
Q |
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| T |
2136154 |
attgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
2136074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 17407750 - 17407799
Alignment:
| Q |
90 |
aaacttcacctccctaaacaattctgtcaactacctaactttccattccc |
139 |
Q |
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| T |
17407750 |
aaacttcatcttcctaaacaattgtgtcaactacccaattttccattccc |
17407799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 39839054 - 39839287
Alignment:
| Q |
10 |
aacaaggagtacccttcatggtgcttgaaagagcaaattgcatagcttcactatggcaaaaaagaacatacgacagattaaaacttcacctccctaaaca |
109 |
Q |
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||||||| ||||||||| | || || |||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || ||||| |
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| T |
39839054 |
aacaaggggtacccttcgttgttctcgaaagagctgattgcatagcatcactatggcaaaaaagaacctacgacagattgaaacttcaccttccaaaaca |
39839153 |
T |
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| Q |
110 |
attctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcgaaacacttt |
209 |
Q |
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| T |
39839154 |
attctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaattt |
39839253 |
T |
|
| Q |
210 |
gaaatcaacccgcgattcaacgagtgtgttcaat |
243 |
Q |
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| T |
39839254 |
gaaatcaacccgcaattcaacgagtgtgttcaat |
39839287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 31290041 - 31290146
Alignment:
| Q |
84 |
agattaaaacttcacctccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaact |
183 |
Q |
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||||| ||||||||||| ||||||| ||| ||||||||||||||| ||||| | | |||| || |||||||| || ||||||||||||||||||||| |
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| T |
31290041 |
agattcaaacttcaccttcctaaaccattatgtcaactacctaaccttccaatgcttgaagatttccctgaatacccttcaaagaaacagttcataaact |
31290140 |
T |
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| Q |
184 |
atcttg |
189 |
Q |
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|||||| |
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| T |
31290141 |
atcttg |
31290146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 31290748 - 31290654
Alignment:
| Q |
97 |
acctccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttcataaactatcttgaa |
191 |
Q |
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|||| ||||||||||| |||||||||| |||| ||||| | || |||| || | |||||| || |||||||||||||||||||||| |||||| |
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| T |
31290748 |
accttcctaaacaattgtgtcaactacttaaccttccaatgcctgaagatttccatgaatacccttcaaagaaacagttcataaactaccttgaa |
31290654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 39733707 - 39733671
Alignment:
| Q |
207 |
tttgaaatcaacccgcgattcaacgagtgtgttcaat |
243 |
Q |
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| T |
39733707 |
tttgaaatcaacccgcaattcaacgagtgtgttcaat |
39733671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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