View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16578_low_38 (Length: 256)
Name: NF16578_low_38
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_38 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 55729677 - 55729915
Alignment:
| Q |
18 |
atgaatctcttttaatttaatccttaaaactaccgatttaaaaataataataatcgttccttctctttctatatccaggtggatgagtacatgtcactat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55729677 |
atgaatctcttttaatttaatccttaaaactaccgatttaaaaataataataatcgttccttctctttctatatccaggtggatgagtacatgtcactat |
55729776 |
T |
|
| Q |
118 |
tcaaaagcatacacaactgtcacgctacagcctacaatatccatcttgtatacaacaattagcaaaaatattttcaatttattttcatggtccccaagtg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55729777 |
tcaaaagcatacacaaccgtcacgctacagcctacaatatccatcttgtatacaacaattagcaaaaatattttcaatttattttcatggtccccaagtg |
55729876 |
T |
|
| Q |
218 |
ctgctcaagtgtgtggaaaagaaaattcaatttttgttt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55729877 |
ctgctcaagtgtgtggaaaagaaaattcaatttttgttt |
55729915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University