View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_44 (Length: 228)
Name: NF16578_low_44
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 24750580 - 24750780
Alignment:
| Q |
13 |
aaatgaaagagacaaaaaaggagatatgagaatatattagtttcatccaatcaatgtatattgcaggctgaaacttcaaagacactaacaagttaaggag |
112 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
24750580 |
aaatcaaaaagacaaaaaagtagatatgagaatatattagtttcatccaatcaatgtatattgcaggccgaaacttcaaagacactaccaagttaaggag |
24750679 |
T |
|
| Q |
113 |
gaagctgaaagacgaaaccggaataatttttgtttcttaaaacacagtaaaatacaaaggctatacctcctacaccaaagacaagttcccaagtattttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24750680 |
gaagctgaaagacgaaaccggaataatttttgtttcttaaaagacagtaaaatacaaaggctatacctcctacaccaaagacaagttcccaggtattttg |
24750779 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
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| |
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| T |
24750780 |
t |
24750780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 51501912 - 51501792
Alignment:
| Q |
13 |
aaatgaaagagacaaaaaaggagatatgagaatatattagtttcatcc-aatcaatgtatattgcaggctgaaacttcaaagacactaacaagt-taagg |
110 |
Q |
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|||| ||||||||||||||||||| ||||| ||| ||||||||||||| || |||||||||||||| |||||||||||||||| |||| ||| | ||||| |
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| T |
51501912 |
aaataaaagagacaaaaaaggagagatgaggataaattagtttcatccaaaacaatgtatattgcatgctgaaacttcaaagatactagcaaatataagg |
51501813 |
T |
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| Q |
111 |
aggaagctgaaagacgaaacc |
131 |
Q |
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||||||||||||||||||||| |
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| T |
51501812 |
aggaagctgaaagacgaaacc |
51501792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 24765606 - 24765678
Alignment:
| Q |
26 |
aaaaaaggagatatgagaatatattagtttcatccaat-caatgtatattgcaggctgaaacttcaaagacac |
97 |
Q |
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||||||||||| ||| | ||| |||||||| |||||| |||||||||||| | ||||||||||||||||||| |
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| T |
24765606 |
aaaaaaggagagatggggatagattagttttatccaaaacaatgtatattgtatgctgaaacttcaaagacac |
24765678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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