View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_8 (Length: 442)
Name: NF16578_low_8
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 41463557 - 41463143
Alignment:
| Q |
18 |
atgatgtctgcaccaatttggtgtggcctttgagcaaaaatggtatcaaaggtttttaaaatctctttggcaaattcaggtgaagaaattactatggttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41463557 |
atgatgtctgcaccaatttggtgtggcctttgagcaaaaatggtatcataggtttttaaaatctctttggcaagttcaggtgaagaaattactatggttg |
41463458 |
T |
|
| Q |
118 |
atacttcacctagttttaggtgcatgatagggccatagattttggataatgttcttaaactatgatgaggtagagagccaataaggtggtgtatgcttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41463457 |
atacttcacctagttttaggtgcatgatagggccatagattttggataatgttcttaaactatgatgaggtagagagccaataaggtggtgtatgcttcc |
41463358 |
T |
|
| Q |
218 |
tatgataggaagggtccatggtccaggtggaagaacatt-ttttgtactttggttgtgactcttaatattctttttaccaattttagaatttgtgtgagg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41463357 |
tatgataggaagggtccatggtccaggtggaagaacatttttttgtactttggttgtgactcttaatattctttttaccaattttagaatttgtgtgagg |
41463258 |
T |
|
| Q |
317 |
aaaagaatgaaacttgttgaaaataaaaggaagggtaagaatgataagctgggatgttccatgaggaaaatgtatatagaaggagagagcaaatggtgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41463257 |
aaaagaatgaaacttgttgaaaataaaaggaagggtaagaatgataagctgggatgttccatgaggaaaatgtatatagaaggagagagcaaatggtgat |
41463158 |
T |
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| Q |
417 |
atgtgtgtgattcat |
431 |
Q |
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| T |
41463157 |
atgtgtgtgattcat |
41463143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 12439594 - 12439712
Alignment:
| Q |
99 |
gaagaaattactatggttgatacttcacctagttttaggtgcatgatagggccatagattttggataatgttcttaaactatgatgaggtagagagccaa |
198 |
Q |
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|||||||| ||||||||||| |||||| |||| ||||||||||||||||||||| ||||||| ||| ||| || | || || ||||| ||||||| |
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| T |
12439594 |
gaagaaataactatggttgaagtttcaccaagttgtaggtgcatgatagggccatattttttggacaattctctcaatttgtggtgtggtagggagccaa |
12439693 |
T |
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| Q |
199 |
taaggtggtgtatgcttcc |
217 |
Q |
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| T |
12439694 |
acaggtgatgtatgcttcc |
12439712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 22939460 - 22939411
Alignment:
| Q |
177 |
ctatgatgaggtagagagccaataaggtggtgtatgcttcctatgatagg |
226 |
Q |
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||||||||||| || || |||||||||| ||||||| ||||||||||||| |
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| T |
22939460 |
ctatgatgaggaagtgaaccaataaggttgtgtatgtttcctatgatagg |
22939411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 22920504 - 22920604
Alignment:
| Q |
87 |
gcaaattcaggtgaagaaattactatggttgatacttcacctagttttaggtgcatgatagggccatagattttggataatgttcttaaactatgatgag |
186 |
Q |
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|||| |||||||||||||| ||||||||||| | |||||||||||||| ||||| || || ||||| ||| |||||| || ||| |||||||||| |
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| T |
22920504 |
gcaatttcaggtgaagaaacaactatggttgaaatttcacctagttttatatgcattattggtccatatttttgtgataattttgttaggctatgatgag |
22920603 |
T |
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| Q |
187 |
g |
187 |
Q |
| |
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| |
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|
| T |
22920604 |
g |
22920604 |
T |
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