View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16578_low_9 (Length: 432)
Name: NF16578_low_9
Description: NF16578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16578_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 41919329 - 41918923
Alignment:
| Q |
10 |
atgaagctgaaaaagagaagttcatcacttagattttgatctcaacatgtcattttggtgtctaattgagtaagtatttcttagatagttaaaccaacca |
109 |
Q |
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| T |
41919329 |
atgaagctgaaaaagagaagttcatcacttagattttgatctcaacatgtcattttggtgtctaattgagtaagtatttcttagatagttaaaccaacca |
41919230 |
T |
|
| Q |
110 |
tatgctactatataccaaacagtacctggggaaggaattgtctttggtttggtgaatgaatcttgcttagtaacaacaggcttacgaactggttcagcaa |
209 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41919229 |
tatgctactatataccaagcagtacctggggaaggaattgtctttggtttggtgaatgaatgttgcttagtaacaacaggcttacgaactggttcagcaa |
41919130 |
T |
|
| Q |
210 |
ctgtaaggaagaaattataccgcaattacttttacgatcaccaaaagatttatttatagcaggaggcgcagaaatttcacaataatgatgccaatacctg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
41919129 |
ctgtaaggaagaaattataccgcaattacttttacgatcaccaaaagatttatttatagcaggaggtgcagaaatttcacgataatgatgccaatacctg |
41919030 |
T |
|
| Q |
310 |
gaaggagctggttatagccaccatgaccaccactgagtcgtgcaagaacacctataagaggagcattgttgtaggttgctggttctgtttgttcatagtt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41919029 |
gaaggagctggttatagccaccatgaccaccactgagtcgtgcaagaacacctataagaggagcattgttgtaggttgctggttctgtttgttcatagtt |
41918930 |
T |
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| Q |
410 |
ctttctt |
416 |
Q |
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||||||| |
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| T |
41918929 |
ctttctt |
41918923 |
T |
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