View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16579_high_1 (Length: 982)
Name: NF16579_high_1
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16579_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 560 - 979
Target Start/End: Original strand, 11420162 - 11420582
Alignment:
| Q |
560 |
gcagtagattaggtcacttgtggatttgaagaagctttcttggattctttggattttgacagtaagaaagtccttccttttttgtggatttagcttgagg |
659 |
Q |
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| T |
11420162 |
gcagtagattaggtcacttgtggatttgaagaagctttcttggattctttggattttgacagtaagaaagtccttccttttttgtggatttagcttgagg |
11420261 |
T |
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| Q |
660 |
acctattagaagattgagcttggttctaactaagctataacaagaagggtattttggaaatttaatttgtacatgtttgttggcagtcttgaaagatact |
759 |
Q |
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| T |
11420262 |
acctatttgaagattgagcttggttctaactaagctataacaagaagggtattttggaaatttaatttgtacatgtttgttggcagtgttgaaagatact |
11420361 |
T |
|
| Q |
760 |
agtagttgctatccttttgaagtagaagagtcaaagctatgaagctctttagtcttttagtattatctttatctttctttagtattactattatggggca |
859 |
Q |
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| T |
11420362 |
agtagttgctatccttttgaagtagaagagtcaaagctatgaagctctttagtcttttagtgttatctttatctttctttagtattactattatggggca |
11420461 |
T |
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| Q |
860 |
gcttccttcacaggacattttagcattgttggaatttaagaaatgcattaagcatgaccctactggttatgttctgaattcatggaatgaggaatccatt |
959 |
Q |
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| T |
11420462 |
gcttccttcacaggacattttagcattgttggaatttaagaaatgcattaagcatgaccctactggttatgttctgaattcatggaatgaggaatccatt |
11420561 |
T |
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| Q |
960 |
gactttgat-gatgtccatct |
979 |
Q |
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| T |
11420562 |
gactttgatggatgtccatct |
11420582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 11419618 - 11419818
Alignment:
| Q |
20 |
tattgcagcatggatgtcaaattgggtattcatttcccttttttccattagttggttgtagccaccataatgctacttatttgtactttagttatgagat |
119 |
Q |
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| T |
11419618 |
tattgcagcatggatgtcaaattgggtattcatttcccttttttccattagttggttgtagccaccataatgctacttatttgtactttagttatgagat |
11419717 |
T |
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| Q |
120 |
tttctgattttgaaagttttaatttttgtactcaattctaaagtttgatacttgaaggtaggtttctttgcagcagtgtacattgtactttaaagaaatg |
219 |
Q |
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| T |
11419718 |
tttctgattttgaaagttttaatttttgtactcaattctaaagtttgatacttgaaggtaggtttctttgcagcagtgtacattgtactttaaagaaatg |
11419817 |
T |
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| Q |
220 |
a |
220 |
Q |
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| T |
11419818 |
a |
11419818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 305 - 430
Target Start/End: Original strand, 11419904 - 11420028
Alignment:
| Q |
305 |
aatgcatttatgttttagtttactatgtttagttattaatgttgcctctgctgaaactgtattgcatttgtacaa-atatgttcnnnnnnnnnagttttc |
403 |
Q |
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| T |
11419904 |
aatgcatttatcttttagtttactatgtttagttattaatgttgcctctgctgaaactgtattgcatttgtacaatatatgtt--ttttttttagttttc |
11420001 |
T |
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| Q |
404 |
aaggataggttctcttgaagattctgg |
430 |
Q |
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| T |
11420002 |
aaggataggttctcttgaagattctgg |
11420028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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