View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16579_high_11 (Length: 249)
Name: NF16579_high_11
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16579_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 29113161 - 29112945
Alignment:
| Q |
15 |
aatatgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagaga |
114 |
Q |
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| T |
29113161 |
aatatgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcggaga |
29113062 |
T |
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| Q |
115 |
agtttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgt |
214 |
Q |
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| T |
29113061 |
agtttgacaatggtatgacaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgccaatgagaggaattcattga |
29112962 |
T |
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| Q |
215 |
tgaaatataagttaggt |
231 |
Q |
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||||||||||||||||| |
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| T |
29112961 |
tgaaatataagttaggt |
29112945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 33312734 - 33312947
Alignment:
| Q |
18 |
atgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33312734 |
atgactaaatttgaaatggcaaatcattagttttagctttgccacattgaactgattatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
33312833 |
T |
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| Q |
118 |
ttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgttga |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
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| T |
33312834 |
ttgacaatggtatgaaaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgcgaatgagaggaattcattgatga |
33312933 |
T |
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| Q |
218 |
aatataagttaggt |
231 |
Q |
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| T |
33312934 |
attataagttaggt |
33312947 |
T |
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