View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16579_high_2 (Length: 489)
Name: NF16579_high_2
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16579_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 30348978 - 30349443
Alignment:
| Q |
19 |
aaatgtccttcgagtggaactaaacactaaatagtcatactcgcttacaaattacaacatttacatacactattgaaaaagttacattccagaccgttgc |
118 |
Q |
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| T |
30348978 |
aaatgtccttcgagtggaactaaacactaaatagtcatactcgcttacaaattacaacatttacatacactattgaaaaagttacattccagaccgttgc |
30349077 |
T |
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| Q |
119 |
tcaaactacataatacatggcaattaaaaggaaaaactcataaaa-cattagtttgtttctaaagtgagcaaataaggagatctatccttgcttcacttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30349078 |
tcaaactacataatacatggcaattaaaaggaaaaactcataaaaacattagtttgtttctaaagtgagcaaataaggagatctatccttgcttcacttt |
30349177 |
T |
|
| Q |
218 |
atagtattgtaatctttaacccaatataaatcaaggttacatgcacttgcatgtgcgcccggaaacaaattcacattggaagagtcttgtccgtgagtaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30349178 |
atagtattgtaatctttaacccaatataaatcaaggttacatacacttgcatgtgcgcccggaaacaaattcacattggaagagtcttgtccgtgagtaa |
30349277 |
T |
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| Q |
318 |
ggagcatgtgatggaaaacaggaatgaagtgtaccttcctagtctgtctttgattgcttgcattgtgtttttgtatgtactcagcagctgcatagacagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30349278 |
ggagcatgtgatggaaaacaggaatgaagtgtaccttcctagtctgtctttgattgcttgcattgtgtttttgtatgtactcagcagctgcatagacagt |
30349377 |
T |
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| Q |
418 |
taaagccaaagtggatgcataatgaacgtaaaacactatgcagaacacagagaaaccctttgcttc |
483 |
Q |
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| T |
30349378 |
taaagccaaagtggatgcataatgaacgtaaaacactatgcagaacacagagaaaccctttgcttc |
30349443 |
T |
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