View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16579_low_10 (Length: 290)

Name: NF16579_low_10
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16579_low_10
NF16579_low_10
[»] scaffold0170 (2 HSPs)
scaffold0170 (78-275)||(19180-19377)
scaffold0170 (231-275)||(19543-19587)
[»] chr7 (3 HSPs)
chr7 (3-77)||(48531718-48531792)
chr7 (78-150)||(24214336-24214408)
chr7 (10-77)||(41510354-41510418)
[»] chr4 (1 HSPs)
chr4 (78-150)||(40158454-40158526)


Alignment Details
Target: scaffold0170 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 78 - 275
Target Start/End: Original strand, 19180 - 19377
Alignment:
Q  78 taggggtggacaaacggtcggttcggccggatttcggttcaaaaatctaaatccgaacgtcaaccgcgggtggtattaagcagtccaattccgcccatca 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19180 taggggtggacaaacggtcggttcggccggattttggttcaaaaatctaaatccgaacgtcaaccgcgggtggtattaagcagtccaaatccgcccatca 19279  T
Q  178 caacactaggttattgcggttttcgggttgggcgaaatacggtttcgacgggtgggttgaaccgggtatgaacaaacaaaaaactctacagagccatg 275  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  19280 caacactcggttattgcggttttcggattgggtgaaatacggtttcgacgggtgggttgaaccgggtatgaacaaacaaaatcctctacagagccatg 19377  T

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Target: scaffold0170; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 19543 - 19587
Alignment:
Q  231 gggttgaaccgggtatgaacaaacaaaaaactctacagagccatg 275  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  19543 gggttgaaccgggtatgaacaaacaaaatcctctacagagccatg 19587  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 48531792 - 48531718
Alignment:
Q  3 cataggtataatgtgtccttgtgctattaagggaaataatacaaaatgaggaacatcattaatgtttgctggcaa 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531792 cataggtataatgtgtccttgtgctattaagggaaataatacaaaatgaggaacatcattaatgtttgctggcaa 48531718  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 24214336 - 24214408
Alignment:
Q  78 taggggtggacaaacggtcggttcggccggatttcggttcaaaaatctaaatccgaacgtcaaccgcgggtgg 150  Q
    ||||| |||||||||||||||||||| |||||||||| | ||||| || |||||||| |  ||||||||||||    
T  24214336 tagggctggacaaacggtcggttcggtcggatttcgggtgaaaaacctcaatccgaaggcaaaccgcgggtgg 24214408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 41510418 - 41510354
Alignment:
Q  10 ataatgtgtccttgtgctattaagggaaataatacaaaatgaggaacatcattaatgtttgctggcaa 77  Q
    |||||||| |||||||||||||| |||||||| ||||| || ||||   |||||||||||||| ||||    
T  41510418 ataatgtggccttgtgctattaaaggaaataacacaaagtgtggaa---cattaatgtttgcttgcaa 41510354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 40158454 - 40158526
Alignment:
Q  78 taggggtggacaaacggtcggttcggccggatttcggttcaaaaatctaaatccgaacgtcaaccgcgggtgg 150  Q
    ||||| |||||||||||||||||||| ||||||| || | ||||| || |||||||| |  ||||||||||||    
T  40158454 tagggctggacaaacggtcggttcggtcggattttgggtgaaaaacctcaatccgaaggcaaaccgcgggtgg 40158526  T

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