View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16579_low_4 (Length: 488)

Name: NF16579_low_4
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16579_low_4
NF16579_low_4
[»] chr8 (4 HSPs)
chr8 (17-474)||(19996201-19996658)
chr8 (40-472)||(15760387-15760820)
chr8 (22-157)||(19873333-19873468)
chr8 (391-472)||(35620004-35620085)
[»] chr5 (2 HSPs)
chr5 (11-472)||(18482433-18482894)
chr5 (276-367)||(16988732-16988823)
[»] chr7 (3 HSPs)
chr7 (13-168)||(38845385-38845540)
chr7 (22-157)||(18479742-18479877)
chr7 (24-119)||(1528986-1529081)
[»] chr1 (3 HSPs)
chr1 (13-168)||(47705464-47705619)
chr1 (241-314)||(2361824-2361897)
chr1 (282-314)||(32610693-32610725)
[»] chr2 (6 HSPs)
chr2 (21-169)||(27034348-27034496)
chr2 (24-85)||(34978044-34978105)
chr2 (279-417)||(31482453-31482591)
chr2 (375-466)||(13486856-13486947)
chr2 (276-367)||(28019529-28019620)
chr2 (54-142)||(21807207-21807295)
[»] chr4 (3 HSPs)
chr4 (21-105)||(35089210-35089294)
chr4 (241-314)||(5241607-5241680)
chr4 (241-314)||(10869149-10869222)
[»] chr6 (5 HSPs)
chr6 (22-157)||(28294141-28294276)
chr6 (22-157)||(28517797-28517932)
chr6 (249-302)||(6108742-6108795)
chr6 (276-367)||(6344500-6344591)
chr6 (241-314)||(14817065-14817138)
[»] chr3 (2 HSPs)
chr3 (249-380)||(55312239-55312370)
chr3 (135-204)||(16155559-16155628)
[»] scaffold0069 (1 HSPs)
scaffold0069 (22-79)||(9701-9758)
[»] scaffold0006 (1 HSPs)
scaffold0006 (22-82)||(88759-88819)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 19996201 - 19996658
Alignment:
Q  17 gtatacagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaa 116  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||     
T  19996201 gtataccgatgctgactgggcaggatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttaatggagaaccaag 19996300  T
Q  117 aagcaacttacagtttcaagatcttcatctaaagctgaatacagggctcttgcatctaccacttctgaattgcaatgacttctctacctcatcaaagatt 216  Q
    ||||||||||||||||| ||| |||||||| ||| ||||||||| ||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  19996301 aagcaacttacagtttccagagcttcatctgaagatgaatacagagctcttgcatctggcacttgtgaattgcaatggcttctctacctcatcaaagatt 19996400  T
Q  217 tgaatgttacatgtatcaaaccatctgttctatattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaaacacct 316  Q
    ||| |||| | || ||||| |||  |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  19996401 tgagtgttccttgcatcaagccacttgttctatatcgtgataaccagagtgctatctacattgatgctaaccctgtctttcatgaacgcaccaaacacct 19996500  T
Q  317 tgaaatatacagccacattgtcagggagaaactacaggctggcttgttcaaactttttcctatttcttctaaagatcaagtagcagatttctttacaaaa 416  Q
    ||||||| || ||||||| ||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  19996501 tgaaatagactgccacatagtcagggagaaactatagactgtcttgttcaaacttcttcctatttcttctaaagatcaagtagcagatttttttacaaaa 19996600  T
Q  417 tcattgcttcctcgaccattcaatttacttctatccaagttggggatgttatatatat 474  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19996601 tcattgcttcctcaaccattcaatttacttctatccaagttggggatgttagatatat 19996658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 40 - 472
Target Start/End: Original strand, 15760387 - 15760820
Alignment:
Q  40 gatgcaaagatactagaaggtcaatttctggacaatgtttctttc-ttggtgactccctcatttcattgaggaccaaaaagcaacttacagtttcaagat 138  Q
    |||| |||||||||||||| || || |||| |||||| ||||||  ||||||| || || |||||||  || || ||||||||||| || |||||||| |    
T  15760387 gatgtaaagatactagaagatctatatctgaacaatgcttcttttgttggtgattctcttatttcatgaagaactaaaaagcaactgactgtttcaaggt 15760486  T
Q  139 cttcatctaaagctgaatacagggctcttgcatctaccacttctgaattgcaatgacttctctacctcatcaaagatttgaatgttacatgtatcaaacc 238  Q
    |||||||| |||| || || || |||||||| ||| | || | |||| | ||  | ||   ||||||  ||| |||||| || ||||  || ||||||||    
T  15760487 cttcatctgaagcagagtatagagctcttgcttctgcaacatgtgaacttcagcggctcacctaccttctcagagatttaaaggttaattgcatcaaacc 15760586  T
Q  239 atctgttctatattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaaacaccttgaaatatacagccacattgtc 338  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||  ||||||||| ||||| ||  || | || || |||    
T  15760587 acctgttctttattgtgataaccagagtgctatctacattgctgctaatcctgtcttccatgaatgcaccaaacatcttgagattgactgtcatatagtc 15760686  T
Q  339 agggagaaactacaggctggcttgttcaaactttttcctatttcttctaaagatcaagtagcagatttctttacaaaatcattgcttcctcgaccattca 438  Q
    || |||||| | || ||||| |||||||||||| | ||||||||||||||||||||||| |||||||| || |||||||| || ||||||| ||| || |    
T  15760687 agagagaaattgcaagctggtttgttcaaacttctccctatttcttctaaagatcaagtggcagattttttcacaaaatccttacttcctcaacctttta 15760786  T
Q  439 atttacttctatccaagttggggatgttatatat 472  Q
    ||   ||||||||||||||||| |||||| ||||    
T  15760787 atccgcttctatccaagttgggaatgttagatat 15760820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 19873333 - 19873468
Alignment:
Q  22 cagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaaaagca 121  Q
    ||||||||||||||||| | || | ||| || ||||| || |||||||| |||||||||||||||||||| ||  | || |||| ||||||||| || ||    
T  19873333 cagatgctgactgggcaggttgtagagacaccagaagatccatttctgggcaatgtttctttcttggtgattcattgatctcatggaggaccaagaaaca 19873432  T
Q  122 acttacagtttcaagatcttcatctaaagctgaata 157  Q
    ||| || || || || ||||| ||| ||||||||||    
T  19873433 actcactgtctctaggtcttcttctgaagctgaata 19873468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 35620004 - 35620085
Alignment:
Q  391 atcaagtagcagatttctttacaaaatcattgcttcctcgaccattcaatttacttctatccaagttggggatgttatatat 472  Q
    |||||||||| ||||| || || ||||| |||||||||| ||||| |||  |  | ||||||||||||||||||||| ||||    
T  35620004 atcaagtagctgattttttcaccaaatctttgcttcctcaaccatgcaaccttttactatccaagttggggatgttagatat 35620085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 11 - 472
Target Start/End: Complemental strand, 18482894 - 18482433
Alignment:
Q  11 caaagggtatacagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgagg 110  Q
    |||||| || ||| ||| ||||||||||  ||| ||||| ||||| || || |||||||| |||||||||||||||||| | ||  | ||||||| ||      
T  18482894 caaaggatacacaaatgttgactgggcagaatgtaaagacactaggagatccatttctggccaatgtttctttcttggtcaatcaattatttcatggaaa 18482795  T
Q  111 accaaaaagcaacttacagtttcaagatcttcatctaaagctgaatacagggctcttgcatctaccacttctgaattgcaatgacttctctacctcatca 210  Q
    ||||||||||||||  | ||||| |  ||||| ||  ||||||||||||| |||||||||||| | || | ||||||| | || ||  |||| ||  | |    
T  18482794 accaaaaagcaactcgcggtttccatgtcttcttcataagctgaatacagagctcttgcatctgcgacatgtgaattgtagtggctcatctatcttctta 18482695  T
Q  211 aagatttgaatgttacatgtatcaaaccatctgttctatattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaa 310  Q
     ||||||  |||||  ||||||||| |||  |||||| |||||||||||||| ||||||||||||||||||||||| | ||| ||  |||||  ||||||    
T  18482694 gagatttagatgttcaatgtatcaagccacatgttctctattgtgataaccaaagtgctatctacattgctgctaatcatgtcttcaatgaatgcaccaa 18482595  T
Q  311 acaccttgaaatatacagccacattgtcagggagaaactacaggctggcttgttcaaactttttcctatttcttctaaagatcaagtagcagatttcttt 410  Q
    ||| ||| | ||  || |||| || |||| ||||||  |||| |||||| | ||||||||| | | |||||||||||||||||||||||||||||| |||    
T  18482594 acatctttagattgactgccatatagtcaaggagaagttacaagctggcctattcaaacttctgcatatttcttctaaagatcaagtagcagattttttt 18482495  T
Q  411 acaaaatcattgcttcctcgaccattcaatttacttctatccaagttggggatgttatatat 472  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  18482494 acaaaatcattgcttcctcaacctttcaatctacttctatccaagttggggatgttatatat 18482433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 16988823 - 16988732
Alignment:
Q  276 attgctgctaaccctgtttttcatgaacacaccaaacaccttgaaatatacagccacattgtcagggagaaactacaggctggcttgttcaa 367  Q
    ||||| ||||| ||||| |||||||| |  || ||||| ||||||||| |  |||||||||| ||||||||||| || ||||| ||||||||    
T  16988823 attgcagctaatcctgtctttcatgagcgtacaaaacatcttgaaatagattgccacattgtaagggagaaacttcaagctggattgttcaa 16988732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 38845540 - 38845385
Alignment:
Q  13 aagggtatacagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggac 112  Q
    |||| ||| ||||||| ||||||||| | |||| ||| |||||||| ||| |||||||||||||||||||||||||| | ||  | ||||||| ||||||    
T  38845540 aaggatattcagatgcagactgggcagggtgcagagacactagaagatcagtttctggacaatgtttctttcttggtaattcattaatttcatggaggac 38845441  T
Q  113 caaaaagcaacttacagtttcaagatcttcatctaaagctgaatacagggctcttg 168  Q
     || || ||||| |||||||| |||||||| ||| |||||||||| ||||| ||||    
T  38845440 taagaaacaactcacagtttctagatcttcctctgaagctgaatatagggcacttg 38845385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 18479877 - 18479742
Alignment:
Q  22 cagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaaaagca 121  Q
    ||||||||||||||||| | || | ||| || ||||| || |||||||| |||||||||||||||||||| ||  | || |||| ||||||||| || ||    
T  18479877 cagatgctgactgggcaggttgtagagacaccagaagatccatttctgggcaatgtttctttcttggtgattcattgatctcatggaggaccaagaaaca 18479778  T
Q  122 acttacagtttcaagatcttcatctaaagctgaata 157  Q
    ||| || || || || ||||| ||| ||||||||||    
T  18479777 actcactgtctctaggtcttcttctgaagctgaata 18479742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 1529081 - 1528986
Alignment:
Q  24 gatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaaaag 119  Q
    ||||||||||||||| |||| || ||||||||| | || ||||| ||||| || |||||||||| | | ||||| ||||| | ||| |||||||||    
T  1529081 gatgctgactgggcaggatgtaaggatactagacgttccatttcaggacattgcttctttcttgatcaatcccttatttcttggagaaccaaaaag 1528986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 47705619 - 47705464
Alignment:
Q  13 aagggtatacagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggac 112  Q
    |||| ||| ||||||| ||||||||| | |||| ||| |||||||| ||| |||||||||||||||||||||||||| | ||  | ||||||| ||||||    
T  47705619 aaggatattcagatgcagactgggcagggtgcagagacactagaagatcagtttctggacaatgtttctttcttggtaattcattaatttcatggaggac 47705520  T
Q  113 caaaaagcaacttacagtttcaagatcttcatctaaagctgaatacagggctcttg 168  Q
     || || ||||| |||||||| |||||||| ||| |||||||||| ||||| ||||    
T  47705519 taagaaacaactcacagtttctagatcttcctctgaagctgaatatagggcacttg 47705464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 2361824 - 2361897
Alignment:
Q  241 ctgttctatattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaaacac 314  Q
    ||||| |||| |||||||| || ||||| ||  |||||||| ||||||||||||||||||| | ||| ||||||    
T  2361824 ctgttttatactgtgataatcaaagtgcaatacacattgcttctaaccctgtttttcatgagcgcactaaacac 2361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 32610725 - 32610693
Alignment:
Q  282 gctaaccctgtttttcatgaacacaccaaacac 314  Q
    ||||||||||| |||||||||||||||||||||    
T  32610725 gctaaccctgtatttcatgaacacaccaaacac 32610693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 27034496 - 27034348
Alignment:
Q  21 acagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaaaagc 120  Q
    ||||||||||| |||||| ||||   |||||||||||| || || ||||| || ||||||||||| || |||||||||||||||| ||| ||||| || |    
T  27034496 acagatgctgattgggcaggatgtttagatactagaagatccatctctggtcattgtttctttctaggagactccctcatttcatggagaaccaagaaac 27034397  T
Q  121 aacttacagtttcaagatcttcatctaaagctgaatacagggctcttgc 169  Q
    ||   || ||||| ||||| ||  || ||||||| || |||||||||||    
T  27034396 aaacaactgtttctagatcatctcctgaagctgagtatagggctcttgc 27034348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 34978105 - 34978044
Alignment:
Q  24 gatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttct 85  Q
    ||||||||||||||||| || |||||||||||| | |||||||| ||||| |||||||||||    
T  34978105 gatgctgactgggcaagttgtaaagatactagacgttcaatttcaggacattgtttctttct 34978044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 31482591 - 31482453
Alignment:
Q  279 gctgctaaccctgtttttcatgaacacaccaaacaccttgaaatatacagccacattgtcagggagaaactacaggctggcttgttcaaactttttccta 378  Q
    |||||||| ||||||||||||||    ||||| |||||||||||| |  |||||||||| |||||||| || || || ||  |  |||||||||| ||      
T  31482591 gctgctaatcctgtttttcatgagaggaccaagcaccttgaaatagattgccacattgtaagggagaagctgcaagcaggaattctcaaacttttaccgg 31482492  T
Q  379 tttcttctaaagatcaagtagcagatttctttacaaaat 417  Q
    | ||||||||||||| | |||| ||||||||||| ||||    
T  31482491 tctcttctaaagatcgaatagctgatttctttaccaaat 31482453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 13486947 - 13486856
Alignment:
Q  375 cctatttcttctaaagatcaagtagcagatttctttacaaaatcattgcttcctcgaccattcaatttacttctatccaagttggggatgtt 466  Q
    |||||||| |||||||||||||| ||||| ||||| || || ||| | ||||  |  || |||||| | |||||||||||||||||||||||    
T  13486947 cctatttcctctaaagatcaagttgcagacttcttcaccaagtcactacttctgcagcctttcaatcttcttctatccaagttggggatgtt 13486856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 28019529 - 28019620
Alignment:
Q  276 attgctgctaaccctgtttttcatgaacacaccaaacaccttgaaatatacagccacattgtcagggagaaactacaggctggcttgttcaa 367  Q
    ||||| ||||| ||||| |||||||| | ||| ||||| ||||||||| |  |||||||||| ||||||||||| || |||||  |||||||    
T  28019529 attgcagctaatcctgtctttcatgagcgcacaaaacatcttgaaatagattgccacattgtgagggagaaacttcaagctggactgttcaa 28019620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 21807295 - 21807207
Alignment:
Q  54 agaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaaaagcaacttacagtttcaagatcttc 142  Q
    |||||||| || ||||||||||| ||||| |||||| | || |||||||| | ||| |||||||||||  | || ||||| ||||||||    
T  21807295 agaaggtctatatctggacaatgcttcttccttggtaaatctctcatttcttggagaaccaaaaagcagttgactgtttccagatcttc 21807207  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 35089210 - 35089294
Alignment:
Q  21 acagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcat 105  Q
    ||||||||||| |||||| | ||   |||||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||    
T  35089210 acagatgctgattgggcaggttgtttagatactagaagatccatttctggtcattgtttctttcttggagactctctcatttcat 35089294  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 5241607 - 5241680
Alignment:
Q  241 ctgttctatattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaaacac 314  Q
    ||||| |||| |||||||| || ||||| ||  |||||||| ||||||||||||||||||| | ||| ||||||    
T  5241607 ctgttttatactgtgataatcaaagtgcaatacacattgcttctaaccctgtttttcatgagcgcactaaacac 5241680  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 10869149 - 10869222
Alignment:
Q  241 ctgttctatattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaaacac 314  Q
    ||||| |||| |||||||| || ||||| ||  |||||||| ||||||||||||||||||| | ||| ||||||    
T  10869149 ctgttttatactgtgataatcaaagtgcaatacacattgcttctaaccctgtttttcatgagcgcactaaacac 10869222  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 28294141 - 28294276
Alignment:
Q  22 cagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaaaagca 121  Q
    ||||||||||||||| | | || | ||| || ||||| || |||||||| |||||||||||||||||||| ||  | || |||| ||||||||| || ||    
T  28294141 cagatgctgactgggtaggttgtagagacaccagaagatccatttctgggcaatgtttctttcttggtgattcattgatctcatagaggaccaagaaaca 28294240  T
Q  122 acttacagtttcaagatcttcatctaaagctgaata 157  Q
    ||| || || || || ||||| ||| ||||||||||    
T  28294241 actcactgtctctaggtcttcttctgaagctgaata 28294276  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 28517932 - 28517797
Alignment:
Q  22 cagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctttcttggtgactccctcatttcattgaggaccaaaaagca 121  Q
    ||||||||||||||| | | || | ||| || ||||| || |||||||| |||||||||||||||||||| ||  | || |||| ||||||||| || ||    
T  28517932 cagatgctgactgggaaggttgtagagacaccagaagatccatttctgggcaatgtttctttcttggtgattcattgatctcatagaggaccaagaaaca 28517833  T
Q  122 acttacagtttcaagatcttcatctaaagctgaata 157  Q
    ||| || || || || ||||| ||| ||||||||||    
T  28517832 actcactgtctctaggtcttcttctgaagctgaata 28517797  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 6108742 - 6108795
Alignment:
Q  249 tattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaa 302  Q
    |||||||||||||  ||||| ||||| ||||||||||||||||| |||||||||    
T  6108742 tattgtgataacctaagtgcaatctatattgctgctaaccctgtatttcatgaa 6108795  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 6344500 - 6344591
Alignment:
Q  276 attgctgctaaccctgtttttcatgaacacaccaaacaccttgaaatatacagccacattgtcagggagaaactacaggctggcttgttcaa 367  Q
    ||||| ||||| ||||| |||||||| | ||| ||||| ||||||||| |  |||||||||| ||||||||||| || |||||  |||||||    
T  6344500 attgcagctaatcctgtctttcatgagcgcacaaaacatcttgaaatagattgccacattgtgagggagaaacttcaagctggactgttcaa 6344591  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 14817065 - 14817138
Alignment:
Q  241 ctgttctatattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaaacac 314  Q
    ||||| |||| |||||||| || ||||| ||  |||||||| ||||||||||||||||||| | ||| ||||||    
T  14817065 ctgttttatactgtgataatcaaagtgcaatacacattgcttctaaccctgtttttcatgagcgcactaaacac 14817138  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 380
Target Start/End: Original strand, 55312239 - 55312370
Alignment:
Q  249 tattgtgataaccagagtgctatctacattgctgctaaccctgtttttcatgaacacaccaaacaccttgaaatatacagccacattgtcagggagaaac 348  Q
    ||||||||||| || ||||||||  |||||||  | || |||||||||||||||   || ||||| ||||||||  || |||| ||||||||||| || |    
T  55312239 tattgtgataatcaaagtgctatgcacattgcatcaaatcctgtttttcatgaaagaactaaacatcttgaaattgactgccatattgtcagggaaaagc 55312338  T
Q  349 tacaggctggcttgttcaaactttttcctatt 380  Q
    ||||||| ||| | ||||||||  ||||||||    
T  55312339 tacaggcaggcatcttcaaactccttcctatt 55312370  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 16155559 - 16155628
Alignment:
Q  135 agatcttcatctaaagctgaatacagggctcttgcatctaccacttctgaattgcaatgacttctctacc 204  Q
    ||||||||||||||||| |||||||||||| | ||||| || || | |||| | ||||||||||| ||||    
T  16155559 agatcttcatctaaagccgaatacagggctttggcatcaacaacgtgtgaactacaatgacttctttacc 16155628  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 9701 - 9758
Alignment:
Q  22 cagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgttt 79  Q
    ||||||| ||||||||| | |||||||||||||||| ||| |||| |||||| |||||    
T  9701 cagatgcagactgggcaggctgcaaagatactagaaagtccatttatggacagtgttt 9758  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 88759 - 88819
Alignment:
Q  22 cagatgctgactgggcaagatgcaaagatactagaaggtcaatttctggacaatgtttctt 82  Q
    ||||||| || |||||| | |||||||||||||||| ||| |||| |||||| ||||||||    
T  88759 cagatgcagattgggcaggctgcaaagatactagaaagtccatttttggacagtgtttctt 88819  T

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