View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16579_low_5 (Length: 459)
Name: NF16579_low_5
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16579_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 8435565 - 8435136
Alignment:
| Q |
18 |
ggttataaccttgtcctgataaacagatcaaggaaaaatatagattagtatgacttgtcaaattgattgaacagtttgtggcattgaaattgagtagctc |
117 |
Q |
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| T |
8435565 |
ggttataaccttgtcctgataaacagatcaagggaaaatacagattagtatgacttgtcaaattgattgaacagtttgtggcattgaaattgagtagctc |
8435466 |
T |
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| Q |
118 |
atcaaacatacattgataaaaatttaactttgtttatgatatccatcaagcattaattaatttcgagcttataaacatatactcagtttaaaaaatataa |
217 |
Q |
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| T |
8435465 |
atcaaacatacattgataaaaatttaactttgtttatgatatccatcaagcattaattaatttcgagcttataaaattatactcagtttaaaaaatataa |
8435366 |
T |
|
| Q |
218 |
gatgccaatagaggacaattagaggcatgtccaaaataagagatagaaatagttgaactatatgagaccgtaccgacacatttgtagagacagatcaaca |
317 |
Q |
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| T |
8435365 |
gatgccaatagaggacaattagagacatgtccaaaataagagatagaaatagttgaactatatgagaccgtaccgacacatttgaagagacagatcaaga |
8435266 |
T |
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| Q |
318 |
cggttttgtcacaaaccaaaggccgaaaatgatagcaatattatataattctaatggtaaatttgtcgatgatctaaaaatgtgacgctgcaatgaaaat |
417 |
Q |
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| T |
8435265 |
cggttttgtcacaaaccaaaggccgaaaatgatagcaatattatataattctaatggtaactttgtcgatgatctaaaaatgtg--gctgcaatgaaaat |
8435168 |
T |
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| Q |
418 |
taaacgaagaaactgtagtgtctctatctctg |
449 |
Q |
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| T |
8435167 |
taaacgaagaaactgtaatgtctctatctctg |
8435136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 8369710 - 8369646
Alignment:
| Q |
77 |
aaattgattgaacagtttgtggcattgaaattgagtagctcatcaaacatacattgataaaaattt |
142 |
Q |
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| T |
8369710 |
aaattgattgaaca-tatgtggcattgacatttaatagctcatcaaacatgctttgatcaaaattt |
8369646 |
T |
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