View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16579_low_7 (Length: 414)
Name: NF16579_low_7
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16579_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 28693729 - 28693359
Alignment:
| Q |
1 |
tcatcagatacatcactataaatagagtgtctccttacatgtatgatcacacatatattactcatcccacttttacttgtattgatatcgatctaccagc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693729 |
tcatcagatacatcactataaataaagtgtctccttgcatgtatgatcacacatatattactcatcccacttttacttgtattgatatcgatctaccagc |
28693630 |
T |
|
| Q |
101 |
accttacttatttggacaagcataccctggttcccctgtttggagaaggagcatatgactagtcgaagtgaatctattcatcagtgtgaagaccacacct |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
28693629 |
accttacttatttggacaagcataccct----cccctgtttggagaaggagcatatgactagtcgcagtgaatctgttcatcagtgtgaagaccacacct |
28693534 |
T |
|
| Q |
201 |
cctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgttccaaagtgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693533 |
cctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgttccaaagtgat |
28693434 |
T |
|
| Q |
301 |
caacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcatagta |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28693433 |
caacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcagagta |
28693359 |
T |
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