View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16579_low_8 (Length: 397)
Name: NF16579_low_8
Description: NF16579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16579_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 74 - 317
Target Start/End: Complemental strand, 4220584 - 4220343
Alignment:
| Q |
74 |
cttgctcatgattgtggaagttaagagagcagcgtgcttgatgtgttggcttacgcacaacctgcaacacacacatcaattcacataatattcttcatcc |
173 |
Q |
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| T |
4220584 |
cttgctcatgattgtggaagttaagagagcagcgtgcttgatgtgttggcttacgcacaacctgcaacacaca--tcaattcacataatattgttcatcc |
4220487 |
T |
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| Q |
174 |
ctatgaactcattgaataagttaaccatttcacaaacatggccgaatcatcttcttcttcactctcctccggttcttattctgcagttttcacaccaaac |
273 |
Q |
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| T |
4220486 |
ctatgaactcattgaataagttaaccatttcacaaacatggccgaatcatcttcttcttcactctcctccgcttcttattctgcagttttcgcaccaaac |
4220387 |
T |
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| Q |
274 |
aaacatggtcaaatcccacacccaaacccatttcacaaacaaaa |
317 |
Q |
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| T |
4220386 |
aaacatggtcgaatcccacacccaaactcatttcacaaacaaaa |
4220343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 4220342 - 4220299
Alignment:
| Q |
339 |
gaaagatttgttcctgcaactttaaagacacaaagaagaacaac |
382 |
Q |
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| T |
4220342 |
gaaagatttcctcctgcaactttaaagacacaaagaagaacaac |
4220299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 31407521 - 31407588
Alignment:
| Q |
48 |
agcttcacatttggccttgctagtagcttgctcatgattgtggaagttaagagagcagcgtgcttgat |
115 |
Q |
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| T |
31407521 |
agcttcacgtttggccttgctagtagcttgctcatgatggtggaagtgaagagagcagcatgcttgat |
31407588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 31407641 - 31407687
Alignment:
| Q |
112 |
tgatgtgttggcttacgcacaacctgcaacacacacatcaattcaca |
158 |
Q |
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| T |
31407641 |
tgatgtgctggcttacgcacaacctgcatgacacacatcaattcaca |
31407687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 31407775 - 31407812
Alignment:
| Q |
160 |
aatattcttcatccctatgaactcattgaataagttaa |
197 |
Q |
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| T |
31407775 |
aatattgttcatccctaggaactcattgaataagttaa |
31407812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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