View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16580_high_1 (Length: 593)
Name: NF16580_high_1
Description: NF16580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16580_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 11 - 578
Target Start/End: Complemental strand, 27794579 - 27794012
Alignment:
| Q |
11 |
catagggagaatccagcatagtgaaagatattttcttgagaaacattatttaatccaacattataaggttatctgtctcatattccttgatttataagtt |
110 |
Q |
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| T |
27794579 |
catagagagaatccagcatagtgaaagatattttcttgagaaacattatttaatccaacattataaggttatctgtctcatattccttgatttataagtt |
27794480 |
T |
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| Q |
111 |
taatttgtaaatattaattataacataagctcattttgtcatgaattttattagggaaaagttgtaggttgagatggttcaatcaattggacccaagaat |
210 |
Q |
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| T |
27794479 |
taatttgtaaatattaattataacataagctcattttgtcatgaattttattagggaaaagttgtaggttgagatggttcaatcaattggacccaagaat |
27794380 |
T |
|
| Q |
211 |
aaacagaaatcctttcacggaggaagaagaagagcgtcttataacttctcatcggattcatggtaatagatgggcggtaattgcaagacacttccccgga |
310 |
Q |
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| T |
27794379 |
aaacagaaatcctttcacggaggaagaagaagagcgtcttataacttctcatcggattcatggtaatagatgggcggtaattgcaagacacttccccgga |
27794280 |
T |
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| Q |
311 |
cggactgataacgctgtaaagaatcattggcatgtgatgatggcgaggattcgtcgagaaaggtataagatctatgcaaaaggtcctcttgatcatcaca |
410 |
Q |
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| T |
27794279 |
cggactgataacgctgtaaagaatcattggcatgtgatgatggcgaggattcgtcgagaaaggtataagatctatgcaaaaggtcctcttgatcatcaca |
27794180 |
T |
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| Q |
411 |
caattttctcttcaaatgatcatcaaacaaactttgagagaacaaatctccactcctttgttgagaagtatcatgaaaagcataatcaccctcgtgtctc |
510 |
Q |
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| T |
27794179 |
caattttctcttcaaatgatcatcaaacaaactttgagagaacaaatctccactcctttgttgagaagtatcatgaaaagcataatcaccctcgtgtctc |
27794080 |
T |
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| Q |
511 |
tcatagctctttccaatttcctaagtttcactttcatggtccaaattcttgttctacaatgcttcaag |
578 |
Q |
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| T |
27794079 |
tcatagctctttccaatttcctaagtttcactttcatggtccaaattcttgttccacaatgcttcaag |
27794012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 354
Target Start/End: Complemental strand, 40752185 - 40751994
Alignment:
| Q |
163 |
agggaaaagttgtaggttgagatggttcaatcaattggacccaagaataaacagaaatcctttcacggaggaagaagaagagcgtcttataacttctcat |
262 |
Q |
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| T |
40752185 |
agggaaaagttgtaggttgagatggttcaatcagctagatccaagaattaacagaagacctttcacagaagaggaagaagagagactacttgcggctcat |
40752086 |
T |
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| Q |
263 |
cggattcatggtaatagatgggcggtaattgcaagacacttccccggacggactgataacgctgtaaagaatcattggcatgtgatgatggc |
354 |
Q |
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| T |
40752085 |
cggattcacggaaacaaatgggcactaatagcaagacttttccctggtagaactgataatgctgtgaagaatcattggcatgttataatggc |
40751994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 18245492 - 18245444
Alignment:
| Q |
170 |
agttgtaggttgagatggttcaatcaattggacccaagaataaacagaa |
218 |
Q |
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| T |
18245492 |
agttgtaggctgagatggttcaaccaactggatccaagaatcaacagaa |
18245444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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