View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16580_high_2 (Length: 590)

Name: NF16580_high_2
Description: NF16580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16580_high_2
NF16580_high_2
[»] chr7 (4 HSPs)
chr7 (10-371)||(32709767-32710128)
chr7 (10-371)||(32718367-32718728)
chr7 (15-269)||(32714994-32715248)
chr7 (449-588)||(32710206-32710345)
[»] chr6 (3 HSPs)
chr6 (25-275)||(10379629-10379879)
chr6 (25-274)||(10411351-10411600)
chr6 (72-110)||(33450452-33450490)
[»] chr8 (4 HSPs)
chr8 (78-139)||(35018084-35018145)
chr8 (76-128)||(33811089-33811141)
chr8 (90-142)||(42991408-42991460)
chr8 (76-144)||(43347670-43347738)
[»] chr3 (2 HSPs)
chr3 (78-139)||(38214048-38214109)
chr3 (78-139)||(38218267-38218328)
[»] chr4 (9 HSPs)
chr4 (76-128)||(53488672-53488724)
chr4 (76-130)||(15796823-15796877)
chr4 (78-136)||(53493033-53493091)
chr4 (78-136)||(53499325-53499383)
chr4 (91-120)||(40309016-40309045)
chr4 (91-120)||(40318483-40318512)
chr4 (91-120)||(40328557-40328586)
chr4 (76-109)||(53495417-53495450)
chr4 (72-128)||(53502441-53502497)
[»] chr1 (1 HSPs)
chr1 (76-128)||(47495936-47495988)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 32709767 - 32710128
Alignment:
Q  10 tcaaaaacagcaagaagttaggagtgaaatttccatttgatcaaccaatgaaagtatacaacagtttatggaatgcagatgattgggcaacaagaggtgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32709767 tcaaaaacagcaagaagttaggagtgaaatttccatttgatcaaccaatgaaagtatacaatagtttatggaatgcagatgattgggcaacaagaggtgg 32709866  T
Q  110 attagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattgatggttgtgaaacctcagttaatgcaaagtactgtgca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709867 attagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattgatggttgtgaaacctcagttaatgcaaagtactgtgca 32709966  T
Q  210 aaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaaggataaagtgggttcgtaagaaatttaccatttata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709967 aaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaaggataaagtgggttcgtaagaaatttaccatttata 32710066  T
Q  310 attactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710067 attactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac 32710128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 32718367 - 32718728
Alignment:
Q  10 tcaaaaacagcaagaagttaggagtgaaatttccatttgatcaaccaatgaaagtatacaacagtttatggaatgcagatgattgggcaacaagaggtgg 109  Q
    |||| ||||||||| | ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||| |||||    
T  32718367 tcaagaacagcaaggacttaggagtgaaatttccatttgaccaaccaatgaaaatttacaacagtttatggaatgcagatgattgggccacaaggggtgg 32718466  T
Q  110 attagagaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattgatggttgtgaaacctcagttaatgcaaagtactgtgca 209  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||  ||||||    
T  32718467 attagaaaaaactgattggtcaaaagcaccattcatagcaggttacaaaagtttccacattgatggttgtgaatcatctgttaatgcaaagttttgtgca 32718566  T
Q  210 aaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaaggataaagtgggttcgtaagaaatttaccatttata 309  Q
    | |||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||||   ||  |||  ||||| ||  | ||||  ||||||||||    
T  32718567 acacaaggtaaaagatggtgggatcaacctgaatttcgtgatcttgatgctgctcaatggcgtagactaagatgggtgcgccaaaaatacaccatttata 32718666  T
Q  310 attactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac 371  Q
    | || || || ||||| | |||||| ||||| || || |||||||| | |||||||||||||    
T  32718667 actattgcaccgataggaaacgtttgcctcaaattccacctgaatgcaaaagagaccgtgac 32718728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 32714994 - 32715248
Alignment:
Q  15 aacagcaagaagttaggagtgaaatttccatttgatcaaccaatgaaagtatacaacagtttatggaatgcagatgattgggcaacaagaggtggattag 114  Q
    ||||||||| | |||||||| ||||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||| || |    
T  32714994 aacagcaaggacttaggagtaaaattcccatttgaccaaccaatgaagatatacaacagtttatggaatgcagatgattgggccacaagaggtggtttgg 32715093  T
Q  115 agaaaacagattggtccaaagcaccattcatagcaggttacaaaagttttcacattgatggttgtgaaacctcagttaatgcaaagtactgtgcaaaaca 214  Q
    |||||||||||||||| |||||||||||||||||||| |||||| | || |||||||||||||||||| | || |||||||||||||  ||||||| |||    
T  32715094 agaaaacagattggtcaaaagcaccattcatagcaggctacaaaggcttccacattgatggttgtgaatcatctgttaatgcaaagttttgtgcaacaca 32715193  T
Q  215 aggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatgg 269  Q
    ||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  32715194 aggtaaaagatggtgggatcaacctgaatttcgtgatcttgatgctgctcaatgg 32715248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 449 - 588
Target Start/End: Original strand, 32710206 - 32710345
Alignment:
Q  449 ccaccgtatattactcgaactatgtaataaggaattgaggttgaacccagtggagcctctatgtaatcttcaatctatattgattggtcaatttcaatga 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32710206 ccaccgtatattactcgaactatgtaataaggaattgaggttgaacccagtggagcctctatgtaatcttcaatctatattgattggtcaatttcaatga 32710305  T
Q  549 taataacaacagtttgttacatccaattcttctctctcga 588  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  32710306 taataacaacagtttgttacatccaattctgatctctcga 32710345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 10379879 - 10379629
Alignment:
Q  25 agttaggagtgaaatttccatttgatcaaccaatgaaagtatacaacagtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacaga 124  Q
    ||||||| |||||||  ||||||   |||||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||    
T  10379879 agttaggggtgaaatacccatttagccaaccaatgaaaatatacaatagtttatggaatgctgatgattgggccacaaggggtggtttagagaaaacaga 10379780  T
Q  125 ttggtccaaagcaccattcatagcaggttacaaaagttttcacattgatggttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaa 224  Q
    ||||||||||||||| ||||||||   ||||||| | || || |||||||| |||||| | || || |||||||| |  ||||  | |||||| | || |    
T  10379779 ttggtccaaagcacccttcatagcctcttacaaagggttccatattgatgggtgtgaagcttctgtgaatgcaaaattttgtgacacacaaggaaaaaga 10379680  T
Q  225 tggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaagg 275  Q
    |||||| ||| ||||||||||| ||||||||||| |||||||||| |||||    
T  10379679 tggtgggatcaacctgaatttcatgaccttgatgttgctcaatggcaaagg 10379629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 25 - 274
Target Start/End: Original strand, 10411351 - 10411600
Alignment:
Q  25 agttaggagtgaaatttccatttgatcaaccaatgaaagtatacaacagtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacaga 124  Q
    ||||||||| |||||  |||||| | |||||||||||| |||| || || ||||||||||| ||||||||||| ||||| ||||| || |||||||||||    
T  10411351 agttaggagggaaatacccatttaaccaaccaatgaaaatatataatagcttatggaatgctgatgattgggctacaaggggtggtttggagaaaacaga 10411450  T
Q  125 ttggtccaaagcaccattcatagcaggttacaaaagttttcacattgatggttgtgaaacctcagttaatgcaaagtactgtgcaaaacaaggtagaaaa 224  Q
    ||||||||||||||| ||||||||    |||||| | ||||| || |||||||||||| | || || |||||||| |  ||||  | |||||| | || |    
T  10411451 ttggtccaaagcacccttcatagcctcatacaaagggtttcatatcgatggttgtgaagcttctgtgaatgcaaaattttgtgacacacaaggaaaaaga 10411550  T
Q  225 tggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaag 274  Q
    |||||| ||| |||||| |||| ||| ||||||| |||||||||| ||||    
T  10411551 tggtgggatcaacctgagtttcatgatcttgatgttgctcaatggcaaag 10411600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 33450452 - 33450490
Alignment:
Q  72 agtttatggaatgcagatgattgggcaacaagaggtgga 110  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  33450452 agtttatggaatgcagataattgggccacaagaggtgga 33450490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 35018084 - 35018145
Alignment:
Q  78 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 139  Q
    |||||||| ||||||||||| |||||||||||||| | |||||| |||||||||||||||||    
T  35018084 tggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcacc 35018145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 33811141 - 33811089
Alignment:
Q  76 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 128  Q
    |||||||||||||||||||||| |||||||||||| | || |||||| |||||    
T  33811141 tatggaatgcagatgattgggctacaagaggtggacttgaaaaaacaaattgg 33811089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 42991408 - 42991460
Alignment:
Q  90 gattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccatt 142  Q
    |||||||| ||||||||||| || | |||||| ||||||||||||||||||||    
T  42991408 gattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 42991460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 43347670 - 43347738
Alignment:
Q  76 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattca 144  Q
    |||||||||||||| | |||||||||||||| ||| | | |||||| ||||||  ||||||||||||||    
T  43347670 tatggaatgcagataactgggcaacaagaggcggactcgtgaaaaccgattggagcaaagcaccattca 43347738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 38214109 - 38214048
Alignment:
Q  78 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 139  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  38214109 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 38214048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 38218328 - 38218267
Alignment:
Q  78 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 139  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  38218328 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 38218267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 53488724 - 53488672
Alignment:
Q  76 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 128  Q
    |||||||||| |||||||||||||||||||||||  | | |||||||||||||    
T  53488724 tatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 15796823 - 15796877
Alignment:
Q  76 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtc 130  Q
    ||||||||||||||||||||||||||  ||| |||  || |||||||||||||||    
T  15796823 tatggaatgcagatgattgggcaacacaaggaggaagagtgaaaacagattggtc 15796877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 53493033 - 53493091
Alignment:
Q  78 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagc 136  Q
    |||||||| |||||||||||||||||||| ||| | |  || |||||||||||||||||    
T  53493033 tggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagc 53493091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 53499325 - 53499383
Alignment:
Q  78 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagc 136  Q
    |||||||| |||||||||||||||||||| ||| | |  || |||||||||||||||||    
T  53499325 tggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagc 53499383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 40309045 - 40309016
Alignment:
Q  91 attgggcaacaagaggtggattagagaaaa 120  Q
    ||||||||||||||||||||||||||||||    
T  40309045 attgggcaacaagaggtggattagagaaaa 40309016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 40318512 - 40318483
Alignment:
Q  91 attgggcaacaagaggtggattagagaaaa 120  Q
    ||||||||||||||||||||||||||||||    
T  40318512 attgggcaacaagaggtggattagagaaaa 40318483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 40328586 - 40328557
Alignment:
Q  91 attgggcaacaagaggtggattagagaaaa 120  Q
    ||||||||||||||||||||||||||||||    
T  40328586 attgggcaacaagaggtggattagagaaaa 40328557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 53495417 - 53495450
Alignment:
Q  76 tatggaatgcagatgattgggcaacaagaggtgg 109  Q
    |||||||||| |||||||||||||||||||||||    
T  53495417 tatggaatgctgatgattgggcaacaagaggtgg 53495450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 53502441 - 53502497
Alignment:
Q  72 agtttatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 128  Q
    ||||| |||||||||||| | |||||||||||||||||| |||  || |||||||||    
T  53502441 agtttgtggaatgcagataactgggcaacaagaggtggactagtcaagacagattgg 53502497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 47495936 - 47495988
Alignment:
Q  76 tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattgg 128  Q
    |||||||||||||||||||||| |||||||||||| | || |||||| |||||    
T  47495936 tatggaatgcagatgattgggctacaagaggtggacttgaaaaaacaaattgg 47495988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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