View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16580_high_3 (Length: 476)
Name: NF16580_high_3
Description: NF16580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16580_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 158 - 406
Target Start/End: Original strand, 3895271 - 3895519
Alignment:
| Q |
158 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctg |
257 |
Q |
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| T |
3895271 |
gagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctg |
3895370 |
T |
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| Q |
258 |
agaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtggga |
357 |
Q |
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| T |
3895371 |
agaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtggga |
3895470 |
T |
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| Q |
358 |
gacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
406 |
Q |
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| T |
3895471 |
gacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 3895007 - 3895197
Alignment:
| Q |
26 |
gcagagaaggcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataaagcca |
125 |
Q |
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| T |
3895007 |
gcagagaaggcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataaagcca |
3895106 |
T |
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| Q |
126 |
gagaaggaacaaatagggctgcagagaaggctgagaatgctggagagaaggctagagattatgcttatgatgcaaaggaaagaaccaagga |
216 |
Q |
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| T |
3895107 |
gagaaggaacaaatagggctgcagagaaggctgagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaagga |
3895197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 3894962 - 3895079
Alignment:
| Q |
101 |
gcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaatgctggagagaaggctagagattatgcttatgatgcaa |
200 |
Q |
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| T |
3894962 |
gcaggttcaatgtgggagaaagccaaagaaggaacagacagagctgcagagaaggcagagaatgctggagagaaagctagagactatgcttatgaggtaa |
3895061 |
T |
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| Q |
201 |
aggaaagaaccaaggaag |
218 |
Q |
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| T |
3895062 |
aagacagaaccaatgaag |
3895079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
428 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
464 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 3895268 - 3895331
Alignment:
| Q |
35 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
98 |
Q |
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| T |
3895268 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
3895331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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