View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16580_low_10 (Length: 228)
Name: NF16580_low_10
Description: NF16580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16580_low_10 |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33670344 - 33670119
Alignment:
| Q |
1 |
agtaaacttcttctcgaaaacggataagagattccactttgatcccacaagtcttttctctttggtccaaaaaggagaaacaatgcgccttcatattaca |
100 |
Q |
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| T |
33670344 |
agtaaacttcttctcgaaaacggataagagattccactttgatcccacatgtcttttctctttggtccaaaaagtagaaaccatgcgccttcatattaca |
33670245 |
T |
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| Q |
101 |
ataagctccaagaattagatataatacgtaacctagtatagcttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatcc |
200 |
Q |
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| T |
33670244 |
ataatctccaagaattagatataatacgtaacctagtatagcttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatcc |
33670145 |
T |
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| Q |
201 |
attaagataccgttacaaagcttttt |
226 |
Q |
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| T |
33670144 |
attaagataccgttacgaagcttttt |
33670119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 33678534 - 33678355
Alignment:
| Q |
42 |
atcccacaagtcttttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaacctagtatag |
141 |
Q |
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| T |
33678534 |
atcccacacgtcttttctctttggtccaaaaaggagaaaccatgctccttcctattaaaataagctccaagaatctgatataatacgtaacttagtatag |
33678435 |
T |
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| Q |
142 |
cttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatccattaagataccgttacaaagctttt |
225 |
Q |
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| T |
33678434 |
cttcaaaatattactatt-aagtaaaaaaatat--taattctatacaaatctaaaatccatttagatatcgtt-caaagctttt |
33678355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 33699188 - 33699025
Alignment:
| Q |
55 |
tttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaacctagta-----tagcttcaaaa |
149 |
Q |
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| T |
33699188 |
tttctctttggtccaaaaagaggagaccatgctcctttctattacaataatctccaagaatcaaatataatacgcaacctaatatcttctagcttcaaga |
33699089 |
T |
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| Q |
150 |
ttttactattgaattagtaaaa--tattataattctatacaaatattgaatccattaagatacc |
211 |
Q |
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| T |
33699088 |
gattaccattgaattagtaaaaataacaacaattctaaacaaatcttaaatccattaagatacc |
33699025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 81981 - 82138
Alignment:
| Q |
55 |
tttctctttggtccaaaaaggagaaacaatgcgccttcatattacaataagctccaagaattagatataatacgtaaccta--gtatagcttcaaaattt |
152 |
Q |
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| T |
81981 |
tttctctctggtccaaaaagaagaaaccatgctcctttctattacaataatctccaagaatcaaatataatacacaacctaagatctagcttcaagagat |
82080 |
T |
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| Q |
153 |
tactattgaattagtaaaatattataattctatacaaatattgaatccattaagatacc |
211 |
Q |
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| T |
82081 |
tactattgaattagtaaaat-taataattctatacaaattttaaatccattaaaatacc |
82138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 105671 - 105594
Alignment:
| Q |
132 |
cctagtatagcttcaaaattttactattgaattagtaaaatattataattctatacaaatattgaatccattaagata |
209 |
Q |
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| T |
105671 |
cctagcatagcttcaaaattttactattgaattagtaaaaaatgataattttataaaaatcttgaatccattaagata |
105594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 105730 - 105681
Alignment:
| Q |
53 |
cttttctctttggtccaaaaaggagaaacaatgcgccttcatattacaat |
102 |
Q |
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|||||||||||||||| |||||||||||| |||||||||| | ||||||| |
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| T |
105730 |
cttttctctttggtccgaaaaggagaaaccatgcgccttcctgttacaat |
105681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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