View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16580_low_4 (Length: 463)

Name: NF16580_low_4
Description: NF16580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16580_low_4
NF16580_low_4
[»] chr2 (78 HSPs)
chr2 (1-453)||(38792364-38792817)
chr2 (11-139)||(39390555-39390683)
chr2 (289-366)||(38793217-38793294)
chr2 (282-390)||(39136859-39136967)
chr2 (29-127)||(39136862-39136960)
chr2 (5-127)||(39415738-39415860)
chr2 (12-145)||(38792925-38793058)
chr2 (36-128)||(39221666-39221758)
chr2 (179-250)||(39136877-39136948)
chr2 (298-453)||(39473931-39474086)
chr2 (11-145)||(38793178-38793312)
chr2 (296-377)||(39415769-39415850)
chr2 (179-243)||(39221689-39221753)
chr2 (296-376)||(39390580-39390660)
chr2 (179-243)||(39390585-39390649)
chr2 (29-145)||(39415252-39415368)
chr2 (176-256)||(39415519-39415599)
chr2 (5-169)||(39473898-39474062)
chr2 (288-407)||(38792923-38793042)
chr2 (318-441)||(39136556-39136679)
chr2 (296-375)||(39221679-39221758)
chr2 (73-163)||(39422178-39422268)
chr2 (36-169)||(39136568-39136701)
chr2 (5-114)||(39390129-39390238)
chr2 (64-157)||(39415161-39415254)
chr2 (5-145)||(39389709-39389849)
chr2 (158-250)||(39415753-39415845)
chr2 (180-243)||(39192629-39192692)
chr2 (180-243)||(39198309-39198372)
chr2 (296-371)||(39451714-39451789)
chr2 (5-83)||(39222551-39222629)
chr2 (11-97)||(39390345-39390431)
chr2 (279-377)||(39415500-39415598)
chr2 (5-139)||(39451686-39451820)
chr2 (5-83)||(39603192-39603270)
chr2 (297-358)||(39137302-39137363)
chr2 (324-377)||(39415161-39415214)
chr2 (37-97)||(39137303-39137363)
chr2 (36-164)||(39152190-39152318)
chr2 (183-243)||(39390169-39390229)
chr2 (179-239)||(39390375-39390435)
chr2 (5-117)||(39415486-39415598)
chr2 (31-139)||(39451434-39451542)
chr2 (179-238)||(39137300-39137359)
chr2 (184-243)||(39222319-39222378)
chr2 (159-250)||(39458721-39458812)
chr2 (288-374)||(39192615-39192701)
chr2 (29-135)||(39192616-39192722)
chr2 (288-374)||(39198295-39198381)
chr2 (29-135)||(39198296-39198402)
chr2 (36-134)||(39222290-39222388)
chr2 (296-374)||(39390160-39390238)
chr2 (296-358)||(39390370-39390432)
chr2 (419-461)||(39415328-39415370)
chr2 (422-463)||(38792921-38792962)
chr2 (191-244)||(38793217-38793270)
chr2 (404-453)||(39152161-39152210)
chr2 (36-145)||(39391033-39391142)
chr2 (179-240)||(39473934-39473995)
chr2 (279-356)||(39602969-39603046)
chr2 (159-251)||(38792957-38793049)
chr2 (187-251)||(39415146-39415210)
chr2 (11-126)||(39192850-39192965)
chr2 (313-376)||(39192892-39192955)
chr2 (11-126)||(39198530-39198645)
chr2 (313-376)||(39198572-39198635)
chr2 (192-251)||(39389758-39389817)
chr2 (5-72)||(39602993-39603060)
chr2 (313-363)||(39193102-39193152)
chr2 (313-363)||(39198782-39198832)
chr2 (347-453)||(39422192-39422298)
chr2 (404-453)||(39416129-39416178)
chr2 (99-164)||(39458543-39458608)
chr2 (202-250)||(39161446-39161494)
chr2 (202-250)||(39207700-39207748)
chr2 (288-332)||(39222562-39222606)
chr2 (291-371)||(39451462-39451542)
chr2 (157-241)||(39602962-39603046)
[»] chr7 (5 HSPs)
chr7 (5-127)||(19807223-19807345)
chr7 (298-377)||(19807233-19807312)
chr7 (179-250)||(19807238-19807309)
chr7 (11-169)||(19806929-19807087)
chr7 (316-441)||(19806917-19807042)
[»] chr5 (3 HSPs)
chr5 (11-133)||(17059194-17059316)
chr5 (191-241)||(33560198-33560248)
chr5 (36-146)||(33560281-33560391)


Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 78)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 38792817 - 38792364
Alignment:
Q  1 acaacttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcga 100  Q
    |||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792817 acaatttctgtttagattcctggtccttcacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcga 38792718  T
Q  101 ctcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctccgtcacatgatctttaaattctctcttttttgattca 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792717 ctcaaggtccttcattcggttttcgaaaagcttctgtttcaatacaaaatcattcaccagctccgtcacatgatctttaaattctctcttttttgattca 38792618  T
Q  201 tgctcctccacctggccttcatgttgcttctcttttgactcaagttccttcgttctgatttaataccaaaatcagtcaccagctctatcacttgaccttc 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38792617 tgctcctccacctggccttcatgttgcttctctttcgactcaagttccttcgttctgatttaatacc-aaatcagtcaccagctctatcacttgaccttc 38792519  T
Q  301 aaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38792518 aaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgctctcaaactgcttttgtctc 38792419  T
Q  401 a--acaccaaatcattcaccagctccttcacttggctttccaaatgcttctgttt 453  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792418 aacacaccaaatcattcaccagctccttcacttggctttccaaatgcttctgttt 38792364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 39390555 - 39390683
Alignment:
Q  11 tttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcc 110  Q
    |||||||||| |  ||| || ||| |||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||| |||||||  |||    
T  39390555 tttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactcc 39390654  T
Q  111 ttcattcggttttcaaaaagcttctgttt 139  Q
    |||||| || |||||||| ||||||||||    
T  39390655 ttcatttggctttcaaaatgcttctgttt 39390683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 366
Target Start/End: Complemental strand, 38793294 - 38793217
Alignment:
Q  289 cacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaag 366  Q
    ||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38793294 cactttaccttcaaattctctagcttttaattcatgctccttcacccgaccttcatgttgcttctcttttaactcaag 38793217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 390
Target Start/End: Complemental strand, 39136967 - 39136859
Alignment:
Q  282 gctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgct 381  Q
    |||| |||||||| | |||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||| | |    
T  39136967 gctccatcacttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctccttgattcggtt 39136868  T
Q  382 ctcgaactg 390  Q
    ||| |||||    
T  39136867 ctcaaactg 39136859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 39136960 - 39136862
Alignment:
Q  29 cacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaa 127  Q
    |||||| | |||||||||||||||||||||| | ||||||||||||||||||||||  ||||| ||||| |||||||| ||||| |||||||| |||||    
T  39136960 cacttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctccttgattcggttctcaaa 39136862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 39415738 - 39415860
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactca 104  Q
    ||||| |||||||| | || ||| ||| || |||||||||||||||||||||||| | ||||| ||||||||||||||||  ||||| ||||| || |||    
T  39415738 cttctttttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattca 39415837  T
Q  105 aggtccttcattcggttttcaaa 127  Q
    || ||||| ||||||||||||||    
T  39415838 agctccttgattcggttttcaaa 39415860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 38793058 - 38792925
Alignment:
Q  12 ttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcct 111  Q
    ||||||||  || ||| |||||||||||||||||||| ||  ||||| || |||||||||| |||| |||||| ||| || |||||| ||||||| ||||    
T  38793058 ttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttcct 38792959  T
Q  112 tcattcggttttcaaaaagcttctgtttcaatac 145  Q
    ||||| || |||| ||| ||||||||||||||||    
T  38792958 tcatttggctttcgaaatgcttctgtttcaatac 38792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 39221758 - 39221666
Alignment:
Q  36 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaa 128  Q
    |||||||||||||||||||||||| | ||||||||||||| |||||||| |||||| ||||| |||||||  ||||||||  || ||||||||    
T  39221758 ccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcatctggctttcaaaa 39221666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 39136948 - 39136877
Alignment:
Q  179 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 250  Q
    ||||||||||| ||||||| ||||||||| |||| |||||||||| |||||||||||||||||||| |||||    
T  39136948 aaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctcctt 39136877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 39473931 - 39474086
Alignment:
Q  298 ttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgt 397  Q
    |||||||||||||  |||||||| |||||||| ||| || || ||| |||||||||||||| ||| ||| | || ||| | ||| || || ||||| |||    
T  39473931 ttcaaattctctctgttttgatttatgctcctccactcggccatcaagctgcttctcttttgacttaagcttctccatgcggctttcaaaatgcttctgt 39474030  T
Q  398 ctcaacaccaaatcattcaccagctccttcacttggctttccaaatgcttctgttt 453  Q
     |  | |||||||||||||| |||||||||||||||||||| || | |||||||||    
T  39474031 tttgataccaaatcattcactagctccttcacttggctttcaaattccttctgttt 39474086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 38793312 - 38793178
Alignment:
Q  11 tttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcc 110  Q
    |||||| ||| || ||| ||||| |||||||||||||||  ||||| |||| |||||||||||||| ||||||| |||||| |||||  |||||||   |    
T  38793312 tttagactccagctcctccactttaccttcaaattctctagcttttaattcatgctccttcacccgaccttcatgttgcttctcttttaactcaagcatc 38793213  T
Q  111 ttcattcggttttcaaaaagcttctgtttcaatac 145  Q
    ||||| ||| ||||||||  ||||| |||||||||    
T  38793212 ttcatccggctttcaaaacacttctttttcaatac 38793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 39415769 - 39415850
Alignment:
Q  296 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattc 377  Q
    |||||||||||||||  ||||||| ||||||| |||||||| ||||||||||||||||||||| | ||||| ||||| ||||    
T  39415769 ccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctccttgattc 39415850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 39221753 - 39221689
Alignment:
Q  179 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 243  Q
    ||||||||||| ||||||| ||||||||| ||||  |||||||||||||||||||||||||||||    
T  39221753 aaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaa 39221689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 39390580 - 39390660
Alignment:
Q  296 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcatt 376  Q
    |||||||||||||||  ||||||||||||||||||||| || | |||||| |||||||||||| ||||||  |||||||||    
T  39390580 ccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcatt 39390660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 39390585 - 39390649
Alignment:
Q  179 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 243  Q
    ||||||||||| ||||||||||||||||| |||  ||| ||||||||||||||||||||||||||    
T  39390585 aaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaa 39390649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 39415252 - 39415368
Alignment:
Q  29 cacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaa 128  Q
    ||||||||||| || ||||||||| ||  |||| ||||||||||  ||| |||||| ||||||| ||||||||||||| || |||| | || |||| |||    
T  39415252 cacttgacctttaagttctctctcgttcaattcatgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggctttctaaa 39415351  T
Q  129 agcttctgtttcaatac 145  Q
     ||||||||||||||||    
T  39415352 tgcttctgtttcaatac 39415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 39415519 - 39415599
Alignment:
Q  176 tttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttcgttct 256  Q
    |||||||||||||| ||||||||||  ||||| ||| || |||||||||||||||||||||| |||||| |||||| ||||    
T  39415519 tttaaattctctctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcctcaagctccttcattct 39415599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 39473898 - 39474062
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactca 104  Q
    ||||| |||||||||  |||||| ||| || | |||||||||||||| ||||||||  ||||||| ||| ||||| |||   ||||| ||||| |||| |    
T  39473898 cttctttttagattctagccccttcacctggctttcaaattctctctgttttgatttatgctcctccactcggccatcaagctgcttctcttttgactta 39473997  T
Q  105 aggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctccgtcac 169  Q
    || | || ||| ||| |||||||| ||||||||||  |||| ||||||||||| |||||| ||||    
T  39473998 agcttctccatgcggctttcaaaatgcttctgttttgataccaaatcattcactagctccttcac 39474062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 407
Target Start/End: Complemental strand, 38793042 - 38792923
Alignment:
Q  288 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaa 387  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||| |||  ||||||  || |||||||| |||||||| |||||||||  ||| |||||    
T  38793042 tcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaa 38792943  T
Q  388 ctgcttttgtctcaacacca 407  Q
     ||||| ||| |||| ||||    
T  38792942 atgcttctgtttcaatacca 38792923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 441
Target Start/End: Complemental strand, 39136679 - 39136556
Alignment:
Q  318 attcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctcaacaccaaatcattcac 417  Q
    |||||||||||||||  || |||||| | ||| |||||||  ||||||| ||||| ||   ||| ||||| ||||| ||| |  | ||||||||||||||    
T  39136679 attcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcac 39136580  T
Q  418 cagctccttcacttggctttccaa 441  Q
    ||||||||||||||||||||||||    
T  39136579 cagctccttcacttggctttccaa 39136556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 39221758 - 39221679
Alignment:
Q  296 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcat 375  Q
    |||||||||||||||  ||||||| |||||||||||||||  |||||||| |||||||||||| ||||||  ||||||||    
T  39221758 ccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcat 39221679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 39422178 - 39422268
Alignment:
Q  73 cccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctc 163  Q
    ||||||| |||  |||||| ||||| ||||||||||||||||||||| |||||||  ||||||||||  |||| ||||||||| |||||||    
T  39422178 cccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctc 39422268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 39136701 - 39136568
Alignment:
Q  36 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttct 135  Q
    |||||||||||| | ||||   |||| ||||||||||  |||||||||  |||| | |||||||||||||| ||||| ||  || |||| ||| ||||||    
T  39136701 ccttcaaattctttttcttccaattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttct 39136602  T
Q  136 gtttcaatacaaaatcattcaccagctccgtcac 169  Q
    ||||  |||| |||||||||||||||||| ||||    
T  39136601 gttttgataccaaatcattcaccagctccttcac 39136568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 39390129 - 39390238
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactca 104  Q
    ||||| |||||||||| |  ||| || ||| |||||||| ||||||||||| ||||| ||||||||||| |||| ||||| |||||| ||||| ||||||    
T  39390129 cttctttttagattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactca 39390228  T
Q  105 aggtccttca 114  Q
    |  |||||||    
T  39390229 aaatccttca 39390238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 39415161 - 39415254
Alignment:
Q  64 gctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcac 157  Q
    |||||||||| || ||||||| |||||| ||||| |||||||| |||||||||||| |||||||| | ||| ||||  |||| |||||||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggctttcaaaatgattcagttttgataccaaatcattcac 39415254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 39389709 - 39389849
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactca 104  Q
    ||||| |||||||||| || ||| | ||||||||||||||||  |||| |||||||| ||||||| ||   || |||||  ||||||  |||| ||||||    
T  39389709 cttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatgctcctgcaattggtcttcaagttgcttcccttttgactca 39389808  T
Q  105 aggtccttcattcggttttcaaaaagcttctgtttcaatac 145  Q
    || ||||||||| || ||| | || ||||||||||||||||    
T  39389809 agctccttcatttggcttttataatgcttctgtttcaatac 39389849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 39415753 - 39415845
Alignment:
Q  158 cagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 250  Q
    ||||||| |||| ||  ||| ||||||||||| ||||||| ||||||| | |||| |||||||||| |||||||||||||| ||||| |||||    
T  39415753 cagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcctt 39415845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 39192629 - 39192692
Alignment:
Q  180 aattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 243  Q
    |||||||||| |||||||||| |||||| ||| ||| ||||||| |||||||||||||||||||    
T  39192629 aattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaa 39192692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 39198309 - 39198372
Alignment:
Q  180 aattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 243  Q
    |||||||||| |||||||||| |||||| ||| ||| ||||||| |||||||||||||||||||    
T  39198309 aattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaa 39198372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 39451789 - 39451714
Alignment:
Q  296 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtcct 371  Q
    |||||||||||||||  |||||||||||||||| ||||||| || ||||| ||| |||| ||||| ||||||||||    
T  39451789 ccttcaaattctctcacttttgattcatgctccatcacccggccctcatgttgcctctcatttaagtcaaggtcct 39451714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 39222629 - 39222551
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttca 83  Q
    ||||| |||||||| | || ||| |||||||  |||||||||||||||||||||||| ||||||||||  |||||||||    
T  39222629 cttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcattcggccttca 39222551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 39390345 - 39390431
Alignment:
Q  11 tttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttcttt 97  Q
    |||||||||| |  ||| || ||| |||||||||||||||||||||||| | ||||||||||| |||| ||||| |||||| |||||    
T  39390345 tttagattccagttccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctcttt 39390431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 39415500 - 39415598
Alignment:
Q  279 ccagctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattc 377  Q
    |||||||  ||||||| | || ||||||||||  ||||||||||  |||||||||  |||||||||| ||||||||||||  |||||| ||||||||||    
T  39415500 ccagctccctcacttggcttttaaattctctctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcctcaagctccttcattc 39415598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 39451820 - 39451686
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactca 104  Q
    ||||| |||||||||| |  ||| |||||  ||||||||||||||| |||||||||| |||||| |||||||||| |||| |||| | || ||  | |||    
T  39451820 cttctttttagattccagatccttcactttgccttcaaattctctcacttttgattcatgctccatcacccggccctcatgttgcctctcatttaagtca 39451721  T
Q  105 aggtccttcattcggttttcaaaaagcttctgttt 139  Q
    ||||||| ||| ||| ||||| || | ||||||||    
T  39451720 aggtcctccatccggctttcataatgtttctgttt 39451686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 39603270 - 39603192
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttca 83  Q
    ||||| |||||||||| || ||| | |||||  |||||||||||||||||||||||| ||||||||| | |||||||||    
T  39603270 cttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttcgctcggccttca 39603192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 39137363 - 39137302
Alignment:
Q  297 cttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctctttt 358  Q
    ||||||||||||||  |||||||||||||||| ||||||| |||||||| || |||||||||    
T  39137363 cttcaaattctctcacttttgattcatgctccatcacccggccttcatgttgtttctctttt 39137302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 39415161 - 39415214
Alignment:
Q  324 gctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattc 377  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattc 39415214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 39137363 - 39137303
Alignment:
Q  37 cttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttcttt 97  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||||| ||| || |||||    
T  39137363 cttcaaattctctcacttttgattcatgctccatcacccggccttcatgttgtttctcttt 39137303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 39152318 - 39152190
Alignment:
Q  36 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttct 135  Q
    |||||||||||   ||||||||||||   | ||||||| || || |||  ||| || ||||| |||||||| ||||| || ||| |||||||| ||||||    
T  39152318 ccttcaaattcatcctcttttgattcaaaccccttcactcgtccatcaagttgtttctctttagactcaagttccttaatccggctttcaaaatgcttct 39152219  T
Q  136 gtttcaatacaaaatcattcaccagctcc 164  Q
    ||||  |||| ||||||||||||||||||    
T  39152218 gtttggataccaaatcattcaccagctcc 39152190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 39390169 - 39390229
Alignment:
Q  183 tctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 243  Q
    ||||||| ||| ||||||||||||| |||  ||| ||||||||||||||||||||||||||    
T  39390169 tctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactcaa 39390229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 39390375 - 39390435
Alignment:
Q  179 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgac 239  Q
    ||||||||||| ||||||| ||||||||| |||  ||| ||||||||||||||||||||||    
T  39390375 aaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctcttttgac 39390435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 39415486 - 39415598
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactca 104  Q
    ||||| |||||||||| || ||  |||||| | || |||||||||||||||||||||   |||||||||  | ||||||| |||||| ||||| | ||||    
T  39415486 cttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcctca 39415585  T
Q  105 aggtccttcattc 117  Q
    || ||||||||||    
T  39415586 agctccttcattc 39415598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 39451542 - 39451434
Alignment:
Q  31 cttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaag 130  Q
    |||| |||||||| ||||| ||||||||||| |||||||||| ||||| ||||  |||||| || || || |||||||||| ||| ||| ||||| || |    
T  39451542 cttggccttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcctccatccggctttcataatg 39451443  T
Q  131 cttctgttt 139  Q
     ||||||||    
T  39451442 tttctgttt 39451434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 39137359 - 39137300
Alignment:
Q  179 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttga 238  Q
    ||||||||||  ||||||||||||||||  |||| ||||||||||||| |||||||||||    
T  39137359 aaattctctcacttttgattcatgctccatcacccggccttcatgttgtttctcttttga 39137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 39222378 - 39222319
Alignment:
Q  184 ctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 243  Q
    |||||| |||||||| |||||||| ||| ||||||||| ||||||||||||| |||||||    
T  39222378 ctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaa 39222319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 39458812 - 39458721
Alignment:
Q  159 agctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 250  Q
    |||||| |||||||  |||  |||||||||||||||||||||||  | ||| |  |||| ||| ||||||||||||| ||||||||||||||    
T  39458812 agctccttcacatggccttcgaattctctcttttttgattcatgtacttcccctcggccatcaagttgcttctctttagactcaagttcctt 39458721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 374
Target Start/End: Original strand, 39192615 - 39192701
Alignment:
Q  288 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttca 374  Q
    ||||||| ||||| |||||||||  |||||||||| ||||||||||  |  ||||||| |||||||||||| ||||||  |||||||    
T  39192615 tcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttca 39192701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 39192616 - 39192722
Alignment:
Q  29 cacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaa 128  Q
    |||||| ||||| ||||||||||||||||||||  ||||||||||  || ||||||  ||||| ||||| |||||||  ||||||| | ||  ||||||     
T  39192616 cacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttcacttggcattcaaat 39192715  T
Q  129 agcttct 135  Q
    |||||||    
T  39192716 agcttct 39192722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 374
Target Start/End: Original strand, 39198295 - 39198381
Alignment:
Q  288 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttca 374  Q
    ||||||| ||||| |||||||||  |||||||||| ||||||||||  |  ||||||| |||||||||||| ||||||  |||||||    
T  39198295 tcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttca 39198381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 39198296 - 39198402
Alignment:
Q  29 cacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaa 128  Q
    |||||| ||||| ||||||||||||||||||||  ||||||||||  || ||||||  ||||| ||||| |||||||  ||||||| | ||  ||||||     
T  39198296 cacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttcacttggcattcaaat 39198395  T
Q  129 agcttct 135  Q
    |||||||    
T  39198396 agcttct 39198402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 39222388 - 39222290
Alignment:
Q  36 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttc 134  Q
    ||||| ||| |||||||||||||||  |||||||||||  ||||||||  |||||| ||||| |||||||  ||||||||| || |||| ||| |||||    
T  39222388 ccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttc 39222290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 39390160 - 39390238
Alignment:
Q  296 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttca 374  Q
    |||||||| ||||||  ||| ||||||||||||||||| || | |||||| |||||||||||| ||||||  |||||||    
T  39390160 ccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactcaaaatccttca 39390238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 39390370 - 39390432
Alignment:
Q  296 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctctttt 358  Q
    |||||||||||||||  ||||||| ||||||||||||| || | |||||| ||||||||||||    
T  39390370 ccttcaaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctctttt 39390432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 461
Target Start/End: Original strand, 39415328 - 39415370
Alignment:
Q  419 agctccttcacttggctttccaaatgcttctgtttcaatacca 461  Q
    ||||| |||||||||||||| ||||||||||||||||||||||    
T  39415328 agctctttcacttggctttctaaatgcttctgtttcaatacca 39415370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 38792962 - 38792921
Alignment:
Q  422 tccttcacttggctttccaaatgcttctgtttcaataccagc 463  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  38792962 tccttcatttggctttcgaaatgcttctgtttcaataccagc 38792921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 38793270 - 38793217
Alignment:
Q  191 ttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaag 244  Q
    |||| |||||||||||| |||| | ||||||||||||||||||||| |||||||    
T  38793270 ttttaattcatgctccttcacccgaccttcatgttgcttctcttttaactcaag 38793217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 39152210 - 39152161
Alignment:
Q  404 accaaatcattcaccagctccttcacttggctttccaaatgcttctgttt 453  Q
    ||||||||||||||||||||||| ||||||||||| || | |||||||||    
T  39152210 accaaatcattcaccagctcctttacttggctttcaaattccttctgttt 39152161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 39391033 - 39391142
Alignment:
Q  36 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttct 135  Q
    |||||||||||  |||| ||| |||| ||||||||||   ||||||||  ||| || ||||| |||||||| ||||||||| || ||||| || ||||||    
T  39391033 ccttcaaattccttctcctttaattcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcatttggctttcacaatgcttct 39391132  T
Q  136 gtttcaatac 145  Q
    | ||||||||    
T  39391133 gcttcaatac 39391142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #59
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 39473934 - 39473995
Alignment:
Q  179 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgact 240  Q
    ||||||||||| |||||||| ||||||||||||  |||| ||| | ||||||||||||||||    
T  39473934 aaattctctctgttttgatttatgctcctccactcggccatcaagctgcttctcttttgact 39473995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #60
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 39603046 - 39602969
Alignment:
Q  279 ccagctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctctt 356  Q
    |||||||  ||||||| |||||||| |||||   |||||||||||||||||||| ||||| |||||| | ||||||||    
T  39603046 ccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttcaaccgactttcatgtttcttctctt 39602969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #61
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 38793049 - 38792957
Alignment:
Q  159 agctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc 251  Q
    |||||| |||| ||| ||| |||||||| ||| ||||| |||||||||| || | || |||||| ||| ||||||||  ||||||||||||||    
T  38793049 agctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttc 38792957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #62
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 39415146 - 39415210
Alignment:
Q  187 tcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc 251  Q
    |||||| ||||||  |||||| |||  | ||||||||||||||||||||||||||||| ||||||    
T  39415146 tcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagctccttc 39415210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #63
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 39192850 - 39192965
Alignment:
Q  11 tttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcc 110  Q
    |||||||||| || ||| |||| | ||||| |||||  |||||||||||||   || ||||||||| ||||||| |||| | || || |||||||| |||    
T  39192850 tttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctcc 39192949  T
Q  111 ttcattcggttttcaa 126  Q
    |||||| || ||||||    
T  39192950 ttcatttggctttcaa 39192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #64
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 39192892 - 39192955
Alignment:
Q  313 ttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcatt 376  Q
    ||||||||||  || |||||||||||||||||| ||| |||| ||| ||||||| |||||||||    
T  39192892 ttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctccttcatt 39192955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #65
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 39198530 - 39198645
Alignment:
Q  11 tttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcc 110  Q
    |||||||||| || ||| |||| | ||||| |||||  |||||||||||||   || ||||||||| ||||||| |||| | || || |||||||| |||    
T  39198530 tttagattccagctcctgcactcggccttccaattccgtctcttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctcc 39198629  T
Q  111 ttcattcggttttcaa 126  Q
    |||||| || ||||||    
T  39198630 ttcatttggctttcaa 39198645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #66
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 39198572 - 39198635
Alignment:
Q  313 ttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcatt 376  Q
    ||||||||||  || |||||||||||||||||| ||| |||| ||| ||||||| |||||||||    
T  39198572 ttttgattcaaacttcttcacccgaccttcatgttgcatctcgtttgactcaagctccttcatt 39198635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #67
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 39389758 - 39389817
Alignment:
Q  192 tttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc 251  Q
    |||||||||||||||| ||  ||| ||||| |||||||| ||||||||||||| ||||||    
T  39389758 tttgattcatgctcctgcaattggtcttcaagttgcttcccttttgactcaagctccttc 39389817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #68
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 39603060 - 39602993
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttca 72  Q
    ||||| |||||||||| || ||  |||||| |||||||| ||||| ||||||||||| ||||||||||    
T  39603060 cttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttca 39602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #69
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 39193102 - 39193152
Alignment:
Q  313 ttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactc 363  Q
    ||||||||||  || |||||||||||||||||| ||| |||||||||||||    
T  39193102 ttttgattcaaacttcttcacccgaccttcatgttgcatctcttttaactc 39193152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #70
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 39198782 - 39198832
Alignment:
Q  313 ttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactc 363  Q
    ||||||||||  || |||||||||||||||||| ||| |||||||||||||    
T  39198782 ttttgattcaaacttcttcacccgaccttcatgttgcatctcttttaactc 39198832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #71
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 453
Target Start/End: Original strand, 39422192 - 39422298
Alignment:
Q  347 tgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctcaacaccaaatcattcaccagctccttcacttggctttccaaatgct 446  Q
    |||||||||||  |||||||||||||||||| ||| || || ||||| ||| |  | |||||||||||| |||||||   || ||||| |||||| | ||    
T  39422192 tgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggccttccaattcct 39422291  T
Q  447 tctgttt 453  Q
    |||||||    
T  39422292 tctgttt 39422298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #72
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 39416129 - 39416178
Alignment:
Q  404 accaaatcattcaccagctccttcacttggctttccaaatgcttctgttt 453  Q
    |||||||||||| | |||||||||||||||||||| || | |||||||||    
T  39416129 accaaatcattccctagctccttcacttggctttcaaattccttctgttt 39416178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #73
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 39458608 - 39458543
Alignment:
Q  99 gactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctcc 164  Q
    |||||||| |||||||||||| |||| ||| ||||||||||  |||  ||||||||||| ||||||    
T  39458608 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctcc 39458543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #74
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 39161494 - 39161446
Alignment:
Q  202 gctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 250  Q
    ||||||||||  | |||||||  ||||||||||||||||||||||||||    
T  39161494 gctcctccactcgtccttcatactgcttctcttttgactcaagttcctt 39161446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #75
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 39207700 - 39207748
Alignment:
Q  202 gctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 250  Q
    ||||||||||  | |||||||  ||||||||||||||||||||||||||    
T  39207700 gctcctccactcgtccttcatactgcttctcttttgactcaagttcctt 39207748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #76
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 39222606 - 39222562
Alignment:
Q  288 tcacttgaccttcaaattctctcgtttttgattcatgctccttca 332  Q
    ||||||||  |||||||||||||  ||||||||||||||||||||    
T  39222606 tcacttgaatttcaaattctctctcttttgattcatgctccttca 39222562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #77
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 39451542 - 39451462
Alignment:
Q  291 cttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtcct 371  Q
    |||| |||||||| |||||   |||||||||||||||||||| ||| | |||| | |||||||| ||| | ||||||||||    
T  39451542 cttggccttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcct 39451462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #78
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 39603046 - 39602962
Alignment:
Q  157 ccagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactc 241  Q
    ||||||||||||| ||  ||| ||| ||||| | ||||||||||||||||| || | | | |||||||| |||||||| ||||||    
T  39603046 ccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttcaaccgactttcatgtttcttctcttctgactc 39602962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 19807345 - 19807223
Alignment:
Q  5 cttctgtttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactca 104  Q
    ||||| |||||||| |||| ||  || ||| | |||||||||||||||||||||| | |||||||||| |||||||||||  ||||| ||||| ||||||    
T  19807345 cttctttttagattgctgctccatcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactca 19807246  T
Q  105 aggtccttcattcggttttcaaa 127  Q
    || ||||| ||||||||||||||    
T  19807245 agctccttgattcggttttcaaa 19807223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 19807312 - 19807233
Alignment:
Q  298 ttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattc 377  Q
    |||||||||||||  ||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  19807312 ttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctccttgattc 19807233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 19807309 - 19807238
Alignment:
Q  179 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 250  Q
    ||||||||||| ||||||| ||||||||| || | |||||||||| |||||||||||||||||||| |||||    
T  19807309 aaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctcctt 19807238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 19807087 - 19806929
Alignment:
Q  11 tttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcc 110  Q
    |||||||||| || | | |||| | ||||||||||||   |||| |||||| ||||||||||  |||||||||  |||| | |||||||||||||| |||    
T  19807087 tttagattccagctcattcactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctcc 19806988  T
Q  111 ttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctccgtcac 169  Q
    || ||  || |||| ||| ||||||||||  |||| |||||||||| ||||||| ||||    
T  19806987 ttaatatggctttcgaaatgcttctgttttgataccaaatcattcatcagctccttcac 19806929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 441
Target Start/End: Complemental strand, 19807042 - 19806917
Alignment:
Q  316 tgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctcaacaccaaatcattc 415  Q
    |||||||||||||||||  || |||||| | ||| |||||||  ||||||| ||||| ||   ||| ||||| ||||| ||| |  | ||||||||||||    
T  19807042 tgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattc 19806943  T
Q  416 accagctccttcacttggctttccaa 441  Q
    | |||||||||||| |||||||||||    
T  19806942 atcagctccttcacgtggctttccaa 19806917  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 17059316 - 17059194
Alignment:
Q  11 tttagattcctgcccctacacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcc 110  Q
    |||||||||| || ||| |||| | ||||||||||| ||||||||||||| ||||||| ||||| |  |||||| ||| || ||||| ||  |||| |||    
T  17059316 tttagattccagctccttcactaggccttcaaattcactctcttttgatttgtgctccatcaccagtgcttcatgttgtttctcttttgatgcaagctcc 17059217  T
Q  111 ttcattcggttttcaaaaagctt 133  Q
    ||||||||| |||| ||| ||||    
T  17059216 ttcattcggctttcgaaatgctt 17059194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 33560248 - 33560198
Alignment:
Q  191 ttttgattcatgctcctccacctggccttcatgttgcttctcttttgactc 241  Q
    ||||||||||  ||||| |||| |||||||||||||| |||||||||||||    
T  33560248 ttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 33560198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 33560391 - 33560281
Alignment:
Q  36 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttct 135  Q
    |||||||||||  |||| ||||| || ||||| ||||  |||||||||  |||||| ||||| |||| ||| ||||||||| || ||||  || ||| ||    
T  33560391 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttctcaatgctcct 33560292  T
Q  136 gtttcaataca 146  Q
    |||||||||||    
T  33560291 gtttcaataca 33560281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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