View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16580_low_7 (Length: 291)
Name: NF16580_low_7
Description: NF16580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16580_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27184752 - 27184645
Alignment:
| Q |
1 |
ttaatttcttaccattttgcagggcatggcctaagattttgtagtgtgcacaatacaagggttactaatcatatttgatagcaacagggaaggcatgccc |
100 |
Q |
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| T |
27184752 |
ttaatttcttaccattttgcagggcatggcctaagattttgtagtgtgcacaatacaacggttactaatcatatttgatagcaacaaggaaggcatgtcc |
27184653 |
T |
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| Q |
101 |
ctcccttt |
108 |
Q |
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|||||||| |
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| T |
27184652 |
ctcccttt |
27184645 |
T |
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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 38172623 - 38172887
Alignment:
| Q |
5 |
tttcttaccattttgcagggcatggcctaagattttgtagtgtgcacaatacaagggttactaatcatatttgatagcaacagggaaggcatgcccctcc |
104 |
Q |
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| T |
38172623 |
tttcttacaactttgcaaggtatgacctaacattttacagtgtgcacaatacatgggtttcttctcatattcaatagcaatagggaaggcatacccctcc |
38172722 |
T |
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| Q |
105 |
ctttccacaagaacataa-aaaacagtcttccagacatgtccacatccactaacaccatatcgtacaagacaaacaccttagcaagagtaacctcatcta |
203 |
Q |
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|||||||| |||||| || ||||| |||||||||||| |||||||||||||||||| || | |||||| ||||||| ||| | ||| |||| |||| |
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| T |
38172723 |
ctttccactagaacagaatcaaacaatcttccagacatatccacatccactaacaccctaacttacaagtcaaacactctagacaaagtcgcctcgtcta |
38172822 |
T |
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| Q |
204 |
tagtta-ggggtacatatacctaaagctatctcaaacaacgtcttatgtctccaatactcttgag |
267 |
Q |
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| T |
38172823 |
tggtaagggggtaccaatacctgaagctatctcgaacaacgtcttcttcctccaatactcttgag |
38172887 |
T |
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