View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16581_high_3 (Length: 389)
Name: NF16581_high_3
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16581_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 36451180 - 36451541
Alignment:
| Q |
16 |
ttgtttttgttcctatataaggagaaagtttaggtagattttcaattgtaagattttgatctacaacaaaagagataaagagagtttaagaagtgatatg |
115 |
Q |
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| T |
36451180 |
ttgtatttgttcctatataaggagaaagtttaggtagatttttaattgtaagattttgatctacaacaaaagagataaagagagtttaagaagtgatatg |
36451279 |
T |
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| Q |
116 |
ggagagtatggttatgcataccgtagcatctcgacttacagtaccataagaaatggaacacgtgagcctgctgttataaaaccatttgttcctttcaatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36451280 |
ggagagtatggttatgcataccgtagcatctcgacttacagtaccataagaaatggaatacgtgagcctgctgttataaaaccatttgttcctttcaatc |
36451379 |
T |
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| Q |
216 |
ccaaaagtaataatggtagtaattactcagacggtgctgttaacaggnnnnnnnttgtaccagttactggcaggccttatgatgagcctgcaacagagaa |
315 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36451380 |
ccaaaagtaataatggtagtaattactcagagggtgctgttaacagtaaaaaaattgtaccagttactggcaggccttatgatgagcctgcaacagagaa |
36451479 |
T |
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| Q |
316 |
atatccctcttcagaggatgaatctgatgatgatgaaaggcgtcgtcaattaagccctgttc |
377 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36451480 |
atatccctcttcagaggatgaatttgatgatgatgaaaggcgtcgtcaattaagccctgttc |
36451541 |
T |
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