View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16581_low_1 (Length: 503)
Name: NF16581_low_1
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16581_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 13398857 - 13398374
Alignment:
| Q |
1 |
tggtctacgtcataaataacaatgaaacttgactatattacatatctccaattttttaaaattttgaatccttcttggaggatgacataaaagaaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
13398857 |
tggtctacgtcataaataacaatgaaaattgactatattacatatctcaaattttttaaaattttgaatccttcttggacgattacataaaagaaaaaca |
13398758 |
T |
|
| Q |
101 |
tacctgaaatggaagtgagattcttccttccctatcccatggctcatattgtcactttaccatttatttttatgacagggatgtgagagatcttggacag |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13398757 |
tacctgaaatggaagagagattcttcctt-----tccgatggctcatattgtcactataccatttatttttacgacagggatgtgagagatcttggacaa |
13398663 |
T |
|
| Q |
201 |
atgatcatttctcttagtggcataccttgattttaacagcggacagtggctaatgctcagtaacttaagagaggaaggaaacccagaccttggcagtaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13398662 |
atgatcatttctcttagtggcataccttgattttaacagcggacagtggctaatgctcagtaacttaagagaggaaggaaacccagaccttggcagtaac |
13398563 |
T |
|
| Q |
301 |
ccaagtcttggacaatcgtcaaattccagtgtttccaaagaggaaggaaacatatccggcaaggacataagttttggacaatttacaaagacaagtgatt |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13398562 |
ccaagtcttggacaatcatcaaattccagtgtttccaaagaggaaggaaacatatccggcaacgacataagttttggacaatttataaagacaagtgatt |
13398463 |
T |
|
| Q |
401 |
tcagaaaagaaggaaaaaagtctttacatgtctcaagccttgaacaacatttaaatgagagatttttcagagtggagatgtgttgaagc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13398462 |
tcagaaaagaaggaaaaaagtctttacatgtctcaagcgttgaacaacatttaaatgagagatttttcagagtggagatgtgttgaagc |
13398374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 106 - 413
Target Start/End: Original strand, 10955150 - 10955459
Alignment:
| Q |
106 |
gaaatggaagtgagattcttccttccctatcccatggctcatattgtcactttaccatttatttttatg-acagggatgtgagagatcttggacagatga |
204 |
Q |
| |
|
|||||||||||| ||||||| || ||| | |||||||||||||| || || | ||| ||||||||| |||||||||| || ||||||||||| |||| |
|
|
| T |
10955150 |
gaaatggaagtgggattcttaatttcctttgccatggctcatattaaca-ttcataattaatttttatggacagggatgtcagcgatcttggacacatga |
10955248 |
T |
|
| Q |
205 |
tcatttctcttagtggcataccttgattttaacagcggacagtggctaatgctcagtaacttaagagaggaaggaaacccagaccttggcagtaacccaa |
304 |
Q |
| |
|
| ||||| | |||||||| ||||| |||| ||||| || | ||||| ||| || |||||||||||| ||||| || ||||||| ||| |||| |
|
|
| T |
10955249 |
cgacttctcagattggcatacattgatgttaatagcgggcatccgttaatgttcaatagcttaagagaggagggaaattcatctcttggcaataaaccaa |
10955348 |
T |
|
| Q |
305 |
gtcttggacaatcgtcaaattccagtgtttccaaagaggaaggaaacatatccggcaaggacataagt--tttggacaatttacaaagacaagtgatttc |
402 |
Q |
| |
|
||||||||||||| ||||||| || || ||||||||||||||| ||||| || ||||||||||||||| | ||||||| ||||||| |||||||||||| |
|
|
| T |
10955349 |
gtcttggacaatcatcaaatttcaatgattccaaagaggaaggcaacatgtctggcaaggacataagttctgtggacaagttacaaatacaagtgatttc |
10955448 |
T |
|
| Q |
403 |
agaaaagaagg |
413 |
Q |
| |
|
|||||||||| |
|
|
| T |
10955449 |
ggaaaagaagg |
10955459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 10944851 - 10944972
Alignment:
| Q |
84 |
gacataaaagaaaaaca-tacctgaaatggaagtgagattcttccttccctatcccatggctcatattgtcactttaccatttatttttatgacagggat |
182 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| || ||| | |||||||||||||| |||||| | |||||||||||||||||| || |
|
|
| T |
10944851 |
gacataaaagaaaaaatgtacctgaaatggaagtgtgattcttcatttcctttgccatggctcatattatcacttcataatttatttttatgacaggcat |
10944950 |
T |
|
| Q |
183 |
gtgagagatcttggacagatga |
204 |
Q |
| |
|
||||| ||||||||||| |||| |
|
|
| T |
10944951 |
gtgagcgatcttggacacatga |
10944972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 11778871 - 11778926
Alignment:
| Q |
143 |
ctcatattgtcactttaccatttatttttatgacagggatgtgagagatcttggac |
198 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
11778871 |
ctcatattgtgactttttcatttatttctatgacagggatgtgagcgattttggac |
11778926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 10086360 - 10086300
Alignment:
| Q |
138 |
catggctcatattgtcactttaccatttatttttatgacagggatgtgagagatcttggac |
198 |
Q |
| |
|
||||||||||||||| | || |||||||||||||||||||| ||| |||| || |||||| |
|
|
| T |
10086360 |
catggctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggac |
10086300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 10193280 - 10193220
Alignment:
| Q |
138 |
catggctcatattgtcactttaccatttatttttatgacagggatgtgagagatcttggac |
198 |
Q |
| |
|
||||||||||||||| | || |||||||||||||||||||| ||| |||| || |||||| |
|
|
| T |
10193280 |
catggctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggac |
10193220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 11156961 - 11157005
Alignment:
| Q |
144 |
tcatattgtcactttaccatttatttttatgacagggatgtgaga |
188 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
11156961 |
tcatattgtcactttgtcatttatttttatcacagggatatgaga |
11157005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 278
Target Start/End: Complemental strand, 829185 - 828992
Alignment:
| Q |
85 |
acataaaagaaaaacatacctgaaatggaagtgagattcttccttccctatcccatggctcatattgtcactttaccatttatttttatgacagggatgt |
184 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| | | |||||||||| ||||| |||||||| ||| |||| | | |||||||| |||||||| || |
|
|
| T |
829185 |
acataaaataaaaacatacctgaaattggagtgcaactattccttccctttcccaaggctcatagtgtaacttcatggtctatttttacgacagggaagt |
829086 |
T |
|
| Q |
185 |
gagagatcttggacagatgatcatttctcttagtggcataccttgattttaacagcggacagtggctaatgctcagtaacttaagagaggaagg |
278 |
Q |
| |
|
| | |||||||||| || | |||||| ||| |||||| || |||||||| || || || |||||||||| || ||||||||| ||||| |
|
|
| T |
829085 |
gtggaatcttggacacatatacccttctctgagtttcataccatgcttttaacatagggcaatgcctaatgctcaatagcttaagagatgaagg |
828992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University