View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16581_low_2 (Length: 405)

Name: NF16581_low_2
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16581_low_2
NF16581_low_2
[»] chr3 (6 HSPs)
chr3 (10-389)||(11497696-11498075)
chr3 (217-354)||(5965466-5965603)
chr3 (161-345)||(5051544-5051725)
chr3 (280-360)||(2919166-2919246)
chr3 (88-213)||(11491346-11491471)
chr3 (286-342)||(7492660-7492716)
[»] chr5 (1 HSPs)
chr5 (140-353)||(16446439-16446652)
[»] chr1 (1 HSPs)
chr1 (226-354)||(17311392-17311520)
[»] scaffold0603 (1 HSPs)
scaffold0603 (172-347)||(5089-5264)
[»] chr8 (1 HSPs)
chr8 (176-367)||(18387589-18387780)
[»] scaffold1301 (1 HSPs)
scaffold1301 (277-358)||(70-151)
[»] chr4 (1 HSPs)
chr4 (292-354)||(5988098-5988160)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 11497696 - 11498075
Alignment:
Q  10 aatatccagtcgacagaacatactcccaaggccccatccaatactaacnnnnnnnttggtttcatattgtcacaactaattgtttgtaaagtaatatatt 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||    
T  11497696 aatatccagtcgacagaacatacacccaaggccccatccaatactaacaaaaaaattggtttcatattgtcacaactaattgtttgtgaagtaatatatt 11497795  T
Q  110 caagaatggtttcacaaaactttaaaataccaaaatcagttgagatatactcccatagtttgaactcaaatttgtcatttacttcaggatcgttataaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11497796 caagaatggtttcacaaaactttaaaataccaaaatcagttgagatatactcccatagtttgaactcaaatttgtcatttacttcaggatcgttataaag 11497895  T
Q  210 gagttctgcaaaggtagttttaccaatcccttcaatacccacgattgaaataatttgtacttgattatcatcacaatcactagacaacaaaagatgttta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  11497896 gagttctgcaaaggtagttttaccaatcccttcaatacccacgattgaaataattcgtatttgactatcatcacaatcactagacaacaaaagatgttta 11497995  T
Q  310 agtttctctttatcactgtctcttccataaatagaagattcatcaaccaaaggagaacttctacgagttccacgcaaaac 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11497996 agtttctctttatcactgtctcttccataaatagaagattcatcaaccaaaggagaacttctacgagttccacgcaaaac 11498075  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 217 - 354
Target Start/End: Complemental strand, 5965603 - 5965466
Alignment:
Q  217 gcaaaggtagttttaccaatcccttcaatacccacgattgaaataatttgtacttgattatcatcacaatcactagacaacaaaagatgtttaagtttct 316  Q
    |||| ||| |||||||||||||||||||||||||| || |||||||||  || || |  ||||||||  |||||||||||||||||||||||||||||||    
T  5965603 gcaagggttgttttaccaatcccttcaatacccacaatggaaataattcctattttaccatcatcaccgtcactagacaacaaaagatgtttaagtttct 5965504  T
Q  317 ctttatcactgtctcttccataaatagaagattcatca 354  Q
     | ||||| ||||||||||||||||| |||||||||||    
T  5965503 ttatatcattgtctcttccataaatacaagattcatca 5965466  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 345
Target Start/End: Complemental strand, 5051725 - 5051544
Alignment:
Q  161 cccatagtttgaactcaaatttgtcatttacttcaggatcgttataaaggagttctgcaaaggtagttttaccaatcccttcaatacccacgattgaaat 260  Q
    |||| ||||| |||||||||||||| ||||| | ||||||||| ||||||||||  |||| ||  ||||||||||||||| | || |||||||| |||||    
T  5051725 cccacagttttaactcaaatttgtcctttacatgaggatcgttgtaaaggagtttagcaagggctgttttaccaatccctaccattcccacgatggaaat 5051626  T
Q  261 aatttgtacttgattatcatcacaatcactagacaacaaaagatgtttaagtttctctttatcactgtctcttccataaatagaa 345  Q
    ||||  || |||   |||||| | |||| |||| || ||||||||||||||||||| |  |||| ||| ||||| ||||||||||    
T  5051625 aattcttatttg---atcatctccatcattagaaaataaaagatgtttaagtttctttacatcattgtttcttctataaatagaa 5051544  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 2919246 - 2919166
Alignment:
Q  280 tcacaatcactagacaacaaaagatgtttaagtttctctttatcactgtctcttccataaatagaagattcatcaaccaaa 360  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||| ||||||||||| |||||    
T  2919246 tcactatcactagacaacaaaagatgtttaagtttgtttttatcactatctctaccataaatacaagattcatcagccaaa 2919166  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 11491346 - 11491471
Alignment:
Q  88 attgtttgtaaagtaatatattcaagaatggtttcacaaaactttaaaataccaaaatcagttgagatatactcccatagtttgaactcaaatttgtcat 187  Q
    ||||||||| |||||||| |||| |||||||||||| ||| | | |||||| |||||||| |||| ||||||  ||| | ||| || |||||||||||||    
T  11491346 attgtttgtgaagtaatagattctagaatggtttcataaaccctgaaaatatcaaaatcatttgaaatatacctccacaattttaattcaaatttgtcat 11491445  T
Q  188 ttacttcaggatcgttataaaggagt 213  Q
     ||||||||| ||||| |||||||||    
T  11491446 gtacttcagggtcgttgtaaaggagt 11491471  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 7492660 - 7492716
Alignment:
Q  286 tcactagacaacaaaagatgtttaagtttctctttatcactgtctcttccataaata 342  Q
    ||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||    
T  7492660 tcactagacaacaaaggatttttaagtttctttatatcactgtctcttccataaata 7492716  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 353
Target Start/End: Complemental strand, 16446652 - 16446439
Alignment:
Q  140 caaaatcagttgagatatactcccatagtttgaactcaaatttgtcatttacttcaggatcgttataaaggagttctgcaaaggtagttttaccaatccc 239  Q
    ||||| || |||||||||   |||| ||||| ||||||||||| ||  ||||||| ||||| |  ||||| ||||  |||| ||  ||||||||||||||    
T  16446652 caaaagcatttgagatatttgcccacagttttaactcaaatttttctcttacttcgggatcatagtaaagcagtttagcaagggatgttttaccaatccc 16446553  T
Q  240 ttcaatacccacgattgaaataatttgtacttgattatcatcacaatcactagacaacaaaagatgtttaagtttctctttatcactgtctcttccataa 339  Q
    | | |||||||| || |||||||||  ||||| | ||| |||| || || |||| || ||||||||||||||||||| | |||||   ||||||||||||    
T  16446552 tcccatacccacaatggaaataattcctactttactattatcaaaaccagtagataataaaagatgtttaagtttctttctatcatcatctcttccataa 16446453  T
Q  340 atagaagattcatc 353  Q
    ||||||||||||||    
T  16446452 atagaagattcatc 16446439  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 17311520 - 17311392
Alignment:
Q  226 gttttaccaatcccttcaatacccacgattgaaataatttgtacttgattatcatcacaatcactagacaacaaaagatgtttaagtttctctttatcac 325  Q
    ||||||||||||||| | |||||||| || ||||||| |  || |||| |||||||| |||||||| ||||||||||||| |||||||| |   |||||     
T  17311520 gttttaccaatccctcccatacccacaatggaaataactcttatttgactatcatcaaaatcactaaacaacaaaagatggttaagtttgttcatatcat 17311421  T
Q  326 tgtctcttccataaatagaagattcatca 354  Q
    | ||||||||||||||| |||||||||||    
T  17311420 tctctcttccataaatacaagattcatca 17311392  T

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Target: scaffold0603 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 347
Target Start/End: Original strand, 5089 - 5264
Alignment:
Q  172 aactcaaatttgtcatttacttcaggatcgttataaaggagttctgcaaaggtagttttaccaatcccttcaatacccacgattgaaataatttgtactt 271  Q
    |||||||||||||||| |||||| | |||||| ||||| |  |  |||| ||| |||||||| |||||| | ||||| || || ||||| ||| ||| ||    
T  5089 aactcaaatttgtcatgtacttcggtatcgttgtaaagaaccttagcaagggttgttttaccgatccctgctataccaacaatggaaatgattcgtattt 5188  T
Q  272 gattatcatcacaatcactagacaacaaaagatgtttaagtttctctttatcactgtctcttccataaatagaaga 347  Q
     | ||||||||| |||   |||||| |||||||||||||||| ||   ||||| ||||||||||||||||||||||    
T  5189 tactatcatcaccatcttcagacaataaaagatgtttaagttccttaatatcattgtctcttccataaatagaaga 5264  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 18387780 - 18387589
Alignment:
Q  176 caaatttgtcatttacttcaggatcgttataaaggagttctgcaaaggtagttttaccaatcccttcaatacccacgattgaaataatttgtacttgatt 275  Q
    |||||||||| || || || ||||| || |||||||  | ||||| ||  ||||||||||||||| | |||||||| || |||||| ||  |  || | |    
T  18387780 caaatttgtccttaacatctggatcattgtaaaggaaatttgcaagggctgttttaccaatccctgccatacccacaatggaaatagttcttgttttact 18387681  T
Q  276 atcatcacaatcactagacaacaaaagatgtttaagtttctctttatcactgtctcttccataaatagaagattcatcaaccaaaggagaac 367  Q
    ||||||||  ||| || |||| ||||||||||||||||| | | ||||| ||||||||||||||||||||| || |||||||| || |||||    
T  18387680 atcatcactgtcattatacaataaaagatgtttaagtttgtttatatcattgtctcttccataaatagaagttttatcaaccacagcagaac 18387589  T

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Target: scaffold1301 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 70 - 151
Alignment:
Q  277 tcatcacaatcactagacaacaaaagatgtttaagtttctctttatcactgtctcttccataaatagaagattcatcaacca 358  Q
    |||||||  ||| ||||||| ||||||||||||||||| | | ||||| ||||||||||||||||| |||||||||||||||    
T  70 tcatcaccgtcattagacaataaaagatgtttaagtttgtttatatcattgtctcttccataaatacaagattcatcaacca 151  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 5988160 - 5988098
Alignment:
Q  292 gacaacaaaagatgtttaagtttctctttatcactgtctcttccataaatagaagattcatca 354  Q
    |||| |||||||| ||||||||||| | ||||| |||||||||||||||||||||||| ||||    
T  5988160 gacagcaaaagatttttaagtttctttatatcattgtctcttccataaatagaagatttatca 5988098  T

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