View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16581_low_3 (Length: 393)
Name: NF16581_low_3
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16581_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 383
Target Start/End: Original strand, 7374291 - 7374657
Alignment:
| Q |
12 |
aagaaagtgtggttaattgtaaaaccttgtatgactcaaaggttcatactaaggaggatactccggaagctaattctattctcatcaggaggcttctaaa |
111 |
Q |
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| T |
7374291 |
aagaaagtgtggttaattgtaaagccttgtatgattcaaaggttcatactaaggaggacactcccgaagctaattctattctcatcaggaggcttctaaa |
7374390 |
T |
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| Q |
112 |
gaagacaagaagagttagaagattctgaaactctctaaacctcatgatgaaactgtcaagcctcaggtagttcatgaagacactcactcattgatcgatg |
211 |
Q |
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| T |
7374391 |
gaagacaagaagagttagaagattctgaaactctctaaatctcatgatgaaactgtcaagcctcaggtagttcatgaagacactcactcatt----gatg |
7374486 |
T |
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| Q |
212 |
agtgaggctgaaaaacagaagttggaagatactgatgtgtttaagattatttccaccaattattaggttcctcagtctgactataaatgctagtgttcct |
311 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7374487 |
agtgaggctggaaaacagaagttggaagatactgatgtgtttaagattgtttccaccaattatcaggttcctcagtctgactataaatgctagtgttcct |
7374586 |
T |
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| Q |
312 |
ggtttcaactttaactttgaacaccaataacaaggaacctactcctagaatgcaagaggagctcaaagttat |
383 |
Q |
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||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7374587 |
ggtttcaac-ttaactttgttcaccaataacaaggaatctactcctagaatgcaagaggagctcaaagttat |
7374657 |
T |
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