View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16581_low_5 (Length: 341)
Name: NF16581_low_5
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16581_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 31943775 - 31944049
Alignment:
| Q |
10 |
atgaaccataaaacaaacaattttcagcatgaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacatg |
109 |
Q |
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| T |
31943775 |
atgaaccataaaacacacaattttcagcaagaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacata |
31943874 |
T |
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| Q |
110 |
tgaagaaataaaccct--nnnnnnnnnnnctttcaacat-aaatcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcct |
206 |
Q |
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| T |
31943875 |
tgaagaaataaaccctaaaaaaaaaaaaactttcaacataaaatcaaacaaaataacataaacaccgaattttcaacatgtaatcatagaaataaatcct |
31943974 |
T |
|
| Q |
207 |
aaaacagcaaacattcaaca----nnnnnnnaaggaccaaactcatgaaatcaagtaaaatataagaaaacacaa |
277 |
Q |
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| T |
31943975 |
aaaacagcaaacattcaacattttttttttgaaggactaaactcatgaaatcaagtaaaatataagaaaacacaa |
31944049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 31944090 - 31944127
Alignment:
| Q |
304 |
tagaaaccttgacataagcattatcgtccagcttatac |
341 |
Q |
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| T |
31944090 |
tagaaaccttgacataagcattatcgtccagcttatac |
31944127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 1341881 - 1341981
Alignment:
| Q |
10 |
atgaaccataaaacaaacaattttcagcatgaaatcatgtc-aattaaaatataatttccaacatgaagaaataaaccct-gaaaacaaaattttcaaca |
107 |
Q |
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| T |
1341881 |
atgaaccataaaacacacaattttaagcaagaaatcatgtcaaagaaaaatttaatttccaacaagaagaaataaaccctaaaaaacaaaattttgaaca |
1341980 |
T |
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| Q |
108 |
t |
108 |
Q |
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| |
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|
| T |
1341981 |
t |
1341981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 1341983 - 1342061
Alignment:
| Q |
147 |
aaatcaaacaaaataacataa-acaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaaca |
226 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||| |||| ||||||| |
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| T |
1341983 |
aaatcaaacaaaataacataatacac--aattttcaacatgcaatcaaagaaataaaccctaaaacaccaaaatttcaaca |
1342061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 340
Target Start/End: Original strand, 1342060 - 1342155
Alignment:
| Q |
246 |
catgaaatcaagtaaaatataagaaaa-cacaaatttatcaacattgaatnnnnnnnnntagaaaccttgacataagcattatcgtccagcttata |
340 |
Q |
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| T |
1342060 |
catgaaataaagtaaaataaaacaaaagcacaaatttatcaacatttaataaaataaaatagaaaccttgacataagcattatcctccagcttata |
1342155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 9394445 - 9394534
Alignment:
| Q |
138 |
tttcaacataaa-tcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaaca |
226 |
Q |
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|||||||||||| ||||||||||||||||||| || | || ||||||| ||||| ||||||||| ||||||||| |||| ||||||| |
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| T |
9394445 |
tttcaacataaaatcaaacaaaataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaaca |
9394534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 9394578 - 9394614
Alignment:
| Q |
304 |
tagaaaccttgacataagcattatcgtccagcttata |
340 |
Q |
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| T |
9394578 |
tagaaaccttgacataagcattatcctccagcttata |
9394614 |
T |
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