View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16581_low_6 (Length: 256)
Name: NF16581_low_6
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16581_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 10634339 - 10634239
Alignment:
| Q |
98 |
caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact |
197 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||||||||| || ||||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
10634339 |
caataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctcccaacagctcacagtgagccaaacaaagagact |
10634240 |
T |
|
| Q |
198 |
t |
198 |
Q |
| |
|
| |
|
|
| T |
10634239 |
t |
10634239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 29718994 - 29718792
Alignment:
| Q |
1 |
gagtgatttatcatcaacatctgtgtatgacaagttcatatgcttaagattatgaca---tcttaatactagaccaacaatttcctcacacatgcccttc |
97 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||| |||||||| ||| ||| |||||| ||| | |||| |||| ||| ||| ||||| |
|
|
| T |
29718994 |
gagtgatttatcatcaacgttggtatatgacaagttcaaatgcttaatcttagtacaacatcttaaaactttagaaacagtttcttcagacacttccttc |
29718895 |
T |
|
| Q |
98 |
caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagact |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||| ||||||||| | |||| ||||||||||||||||| |
|
|
| T |
29718894 |
caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaagagact |
29718795 |
T |
|
| Q |
198 |
tta |
200 |
Q |
| |
|
||| |
|
|
| T |
29718794 |
tta |
29718792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 29658872 - 29658765
Alignment:
| Q |
93 |
ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag |
192 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| | |||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
29658872 |
ccttccaatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctctcaagtattgacagcgagccaaacaaag |
29658773 |
T |
|
| Q |
193 |
agacttta |
200 |
Q |
| |
|
|||||||| |
|
|
| T |
29658772 |
agacttta |
29658765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 29691387 - 29691280
Alignment:
| Q |
93 |
ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag |
192 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
29691387 |
ccttccaatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaag |
29691288 |
T |
|
| Q |
193 |
agacttta |
200 |
Q |
| |
|
|||||||| |
|
|
| T |
29691287 |
agacttta |
29691280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 33160696 - 33160803
Alignment:
| Q |
93 |
ccttccaatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaag |
192 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||||| ||| ||| ||||| | |||||||||||||||||| ||| ||||| |||||| |||| |
|
|
| T |
33160696 |
ccttcgaatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaag |
33160795 |
T |
|
| Q |
193 |
agacttta |
200 |
Q |
| |
|
|||||||| |
|
|
| T |
33160796 |
agacttta |
33160803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 30827304 - 30827374
Alignment:
| Q |
98 |
caatagctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaa |
168 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
30827304 |
caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaa |
30827374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 6594505 - 6594411
Alignment:
| Q |
104 |
ctcaaatccagcacctccaagttggggaaaatggaagtaaacagcaagatgttttcatctctcaacagcttacagttagccaaacaaagagactt |
198 |
Q |
| |
|
|||||||| |||| |||||| |||||||||| |||| ||||| | ||||||||||||| |||| ||| |||| |||||||||||||||||| |
|
|
| T |
6594505 |
ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatctttcaagtgctcacagcgagccaaacaaagagactt |
6594411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17205627 - 17205660
Alignment:
| Q |
1 |
gagtgatttatcatcaacatctgtgtatgacaag |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17205627 |
gagtgatttatcatcaacatctgtgtatgacaag |
17205660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University