View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16581_low_7 (Length: 241)
Name: NF16581_low_7
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16581_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33224537 - 33224316
Alignment:
| Q |
1 |
ttcaaaaaataaataaatgaacactgcacttagaactctaaagtgtgttttcacaccaacatgtaagtttgattagcccctgccaatctacacacattgg |
100 |
Q |
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| T |
33224537 |
ttcaaaaaataaataaatgaacactgcacttagaactctaaagtgtgttttcacaccaacatgtaagtttgattagcccccgccaatctacacgcattgg |
33224438 |
T |
|
| Q |
101 |
atgctagagagtatactagcgaatcctcttcaaaatacttttgaaaccttaattttgtttgcacaagcacactaagggtatatctttcggtattagttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33224437 |
atgctagagagtatactagcgaatcctcttcaaaatacttttgaaaccttaattttgtttgcacaagcacactaaggg--tatctttcggtattagttta |
33224340 |
T |
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| Q |
201 |
cagaaaaatgtttcctacacttca |
224 |
Q |
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|| |||||||||||||| |||||| |
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| T |
33224339 |
caaaaaaatgtttcctatacttca |
33224316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 31892818 - 31892893
Alignment:
| Q |
147 |
ccttaattttgtttgcacaagcacactaagggtatatctttcggtattagtttacagaaaaatgtttcctacacttca |
224 |
Q |
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||||||| | ||||| |||||||| ||||| |||| |||||| || ||||||| |||| |||||||||||||||||| |
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| T |
31892818 |
ccttaatgtggtttgaacaagcacgctaagcgtat--ctttcgataatagtttatagaagaatgtttcctacacttca |
31892893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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