View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16581_low_8 (Length: 211)
Name: NF16581_low_8
Description: NF16581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16581_low_8 |
 | |
|
| [»] chr6 (21 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0349 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 21)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27604307 - 27604513
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27604307 |
tatctattcatgtccaataagataagttagtatgtaa----caacatcataatcacatccatgtacactcagaatatattatacatttctaactattttg |
27604402 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27604403 |
acatataaataactaatacttgtttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattgaata |
27604502 |
T |
|
| Q |
201 |
aagaaaataca |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
27604503 |
aagaaaataca |
27604513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26803025 - 26802823
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
26803025 |
tatctattcatgtccaacaagataagttagtatgtact-aacaacatcacaatcacatccatgtac--tcataatatattatacatttctaactatttca |
26802929 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||||||| || ||||||||||| || |||||||||| ||| ||||||| ||||| | |
|
|
| T |
26802928 |
acatataaataactaatacttgtttaaaaacgtatataagaaaggtatt---tcccatttaacctttaagatgagattattgggaaattgaagttgaaga |
26802832 |
T |
|
| Q |
201 |
aagaaaata |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
26802831 |
aataaaata |
26802823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 27427215 - 27427356
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| ||| |||||||||||||||| | ||||||||| |
|
|
| T |
27427215 |
tatctattcatgtccaataatataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttg |
27427310 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaatgaaaaaggt |
146 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
27427311 |
acatataaataactaacaattgtttaaaaacataaataaaaaaggt |
27427356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 28786817 - 28786677
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
28786817 |
tatctattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttg |
28786724 |
T |
|
| Q |
101 |
acatataaataact-aatacttgtttaaaaacgtaaatgaaaaaggt |
146 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
28786723 |
acataaaaataattaaatacttgtttaaaaacgtaaatagaaaaggt |
28786677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 28792938 - 28792798
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
28792938 |
tatctattaatgtccgataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttg |
28792845 |
T |
|
| Q |
101 |
acatataaataact-aatacttgtttaaaaacgtaaatgaaaaaggt |
146 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
28792844 |
acataaaaataattaaatacttgtttaaaaacgtaaatagaaaaggt |
28792798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 28781680 - 28781549
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
28781680 |
tatctattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttg |
28781587 |
T |
|
| Q |
101 |
acatataaataact-aatacttgtttaaaaacgtaaat |
137 |
Q |
| |
|
||||| |||||| | |||| |||||||||||||||||| |
|
|
| T |
28781586 |
acataaaaataattaaataattgtttaaaaacgtaaat |
28781549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27592624 - 27592826
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||| | |
|
|
| T |
27592624 |
tatctattcatgtgcaataagataagttagtgt----ctaacaacatcacaatcacatccatgt--actaagaatgtattatacatttctaactatttcg |
27592717 |
T |
|
| Q |
101 |
acatataaataactaa---tacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattga |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| || ||||||||||| || | ||||||||| || |||||||||| | ||||||| |||| |
|
|
| T |
27592718 |
acatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatt---tcccttttaacctttaagatgagattattgtaaaattgaagttga |
27592814 |
T |
|
| Q |
198 |
ataaagaaaata |
209 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
27592815 |
agaaataaaata |
27592826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27679529 - 27679327
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||| | |
|
|
| T |
27679529 |
tatctattcatgtgcaataagataagttagtgt----ctaacaacatcacaatcacatccatgt--actaagaatgtattatacatttctaactatttcg |
27679436 |
T |
|
| Q |
101 |
acatataaataactaa---tacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattga |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| || ||||||||||| || | ||||||||| || |||||||||| | ||||||| |||| |
|
|
| T |
27679435 |
acatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatt---tcccttttaacctttaagatgagattattgtaaaattgaagttga |
27679339 |
T |
|
| Q |
198 |
ataaagaaaata |
209 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
27679338 |
agaaataaaata |
27679327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27677223 - 27677420
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||| | |
|
|
| T |
27677223 |
tatctattcatgtgcaataagataagttagtgtctaa----caacatcacaatcacatccatgtact-----aatgtattatacatttctaactatttcg |
27677313 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaac-gtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaat |
199 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| ||| || ||||||||||| || | ||||||||| || |||||||||| | | ||||||| ||||| |
|
|
| T |
27677314 |
acatataaataactaatagtacttttaaaactgtatataaaaaaggtatt---tcccttttaacctttaagatgagattattgtgaaattgaagttgaag |
27677410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 27706007 - 27706153
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||| ||| ||||| |||||| ||||||| ||||||| | |
|
|
| T |
27706007 |
tatctattcatgtgcaataagataagttagtgt----ctaacaacatcccaatcacatccatgt--actaagaatgtattattcatttctaactatttcg |
27706100 |
T |
|
| Q |
101 |
acatataaataactaa---tacttgtttaaaaacgtaaatgaaaaaggtattt |
150 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| || |||||||||||| |
|
|
| T |
27706101 |
acatataaataactaatagtacttgtttaaaactgtatataaaaaaggtattt |
27706153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 27698224 - 27698301
Alignment:
| Q |
40 |
aacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttgacatataaataactaatac |
119 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
27698224 |
aacaacatcacaatcacatctatgtac--tcagaatatattataaatttctaactatttcgacatataaataactaatac |
27698301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 26646992 - 26646932
Alignment:
| Q |
71 |
agaatatattatacatttctcactattttgacatataaataactaatacttgtttaaaaac |
131 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26646992 |
agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac |
26646932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 26752960 - 26752900
Alignment:
| Q |
71 |
agaatatattatacatttctcactattttgacatataaataactaatacttgtttaaaaac |
131 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26752960 |
agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac |
26752900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 25539122 - 25538997
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| | || |||| ||||||||||||||| | |||||||||||| || |||| | | ||||| |
|
|
| T |
25539122 |
tatctattcatgtccaataagataagttagaacataa--actaaaatcaaaatcacatccatgtat--tgagaatatattatgcaattctaatttttttg |
25539027 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaa |
130 |
Q |
| |
|
|||||||||||||| | |||||||| |||| |
|
|
| T |
25539026 |
acatataaataacttacacttgttttaaaa |
25538997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27610723 - 27610782
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgt |
64 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
27610723 |
tatctattcatgcccaataagataagttagtatg----tgacaacatcacaatcacatccatgt |
27610782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 26143447 - 26143322
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaac-aacatcacaatcacatccatgtacactcagaatatattatacatttctcactatttt |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||| || || |||| ||||||||||||||| | |||||||||||| || |||| ||| |||| |
|
|
| T |
26143447 |
tatctattcatgtccaataagataaattagaa---aatacactaaaatcaaaatcacatccatgtat--tgagaatatattatgcaattctaactttttt |
26143353 |
T |
|
| Q |
100 |
gacatataaataactaatacttgtttaaaaa |
130 |
Q |
| |
|
||||||||||||||| | |||||||| |||| |
|
|
| T |
26143352 |
gacatataaataacttacacttgttttaaaa |
26143322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27718102 - 27718156
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatc |
59 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
27718102 |
tatctattcatgtccagtaagataagttagtatg----tgacaacatcacaatcacatc |
27718156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27530904 - 27530936
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27530904 |
tatctattcatgtccaataagataagttagtat |
27530936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 25483638 - 25483609
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttag |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25483638 |
tatctattcatgtccaataagataagttag |
25483609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 25483572 - 25483512
Alignment:
| Q |
71 |
agaatatattatacatttctcactattttgacatataaataactaatacttgtttaaaaac |
131 |
Q |
| |
|
||||||||| || || |||| ||| ||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
25483572 |
agaatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaac |
25483512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26884649 - 26884621
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagtta |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26884649 |
tatctattcatgtccaataagataagtta |
26884621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 60148 - 60007
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| ||| |||||||||||||||| | ||||||||| |
|
|
| T |
60148 |
tatctattcatgtccaataatataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttg |
60053 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaatgaaaaaggt |
146 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
60052 |
acatataaataactaacaattgtttaaaaacataaataaaaaaggt |
60007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 18074340 - 18074199
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| ||| |||||||||||||||| | ||||||||| |
|
|
| T |
18074340 |
tatctattcatgtccaataatataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttg |
18074245 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaatgaaaaaggt |
146 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
18074244 |
acatataaataactaacaattgtttaaaaacataaataaaaaaggt |
18074199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 18723684 - 18723819
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||| ||| ||||||| |||||||||| ||||||||| |
|
|
| T |
18723684 |
tatctattcatgtccaataagataagtcagtatgtaa----caacatcacagtcacatccatttac--tcataatatatcatacatttctaactattttg |
18723777 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaatgaaaa |
142 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
18723778 |
acttataaataactaatacttgtttaaaaatgtaaataaaaa |
18723819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18731103 - 18731232
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| | ||| ||||||| |||||||||| ||||||||| |
|
|
| T |
18731103 |
tatctattcatgtccaataagataagtcagtatgtaa----caacatcacagtcacatccatgtcc--tcataatatatcatacatttctaactattttg |
18731196 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaa |
136 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18731197 |
acttataaataactaatacttgtttaaaaatgtaaa |
18731232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 18655076 - 18655211
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||| || ||||||||||||| |||||||||| | ||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
18655076 |
tatctattcatgtccaataagataaatcagtgtg----taacaacatcacagtcacatccattt--actcataatatatcatacatttctaactattttg |
18655169 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaaatgaaaa |
142 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
18655170 |
acttataaataactaatacttgtttaaaaatgtaaataaaaa |
18655211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18698999 - 18699127
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||| || ||||||||||||| |||||||||||| |||| | ||||| |||||||||| ||||||||| |
|
|
| T |
18698999 |
tatctattcatgtccaataagataaatcagtgtg----taacaacatcacagtcacatccatgt--cctcatagtatatcatacatttctaactattttg |
18699092 |
T |
|
| Q |
101 |
acatataaataactaatacttgtttaaaaacgtaa |
135 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
18699093 |
acttataaataactaatacttgtttaaaaacgtaa |
18699127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 18679159 - 18679301
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctca-------c |
93 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||| ||||||| |||||||||| | | |
|
|
| T |
18679159 |
tatctattcatgtccaataagataagtcagtatgtaa----caacatcacagtcacacccatgtac--tcataatatatcatacatttctaaattcaaac |
18679252 |
T |
|
| Q |
94 |
tattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaa |
142 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18679253 |
tattttgacttataaataactaatacttgtttaaaaacgtaaataaaaa |
18679301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 8066 - 7935
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
8066 |
tatctattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttg |
7973 |
T |
|
| Q |
101 |
acatataaataact-aatacttgtttaaaaacgtaaat |
137 |
Q |
| |
|
||||| || ||| | ||||||||||||||||||||||| |
|
|
| T |
7972 |
acataaaagtaattaaatacttgtttaaaaacgtaaat |
7935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 13278 - 13409
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatattatacatttctcactattttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
13278 |
tatctattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttg |
13371 |
T |
|
| Q |
101 |
acatataaataact-aatacttgtttaaaaacgtaaat |
137 |
Q |
| |
|
||||| || ||| | ||||||||||||||||||||||| |
|
|
| T |
13372 |
acataaaagtaattaaatacttgtttaaaaacgtaaat |
13409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4315 - 4457
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgtacactcagaatatat--tatacatttctcactattt |
98 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |
|
|
| T |
4315 |
tatctattaatgtccgataagataagttagtatg----taacaacatcacaatcacatccatgt--actcataatatatggtatacatttctaactattg |
4408 |
T |
|
| Q |
99 |
tgacatataaataact-aatacttgtttaaaaacgtaaatgaaaaaggt |
146 |
Q |
| |
|
||||||| || ||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
4409 |
tgacataaaagtaattaaatacttgtttaaaaacgtaaatataaaaggt |
4457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 267943 - 268094
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtat--gtaattaacaacatcaca--atcacatccatgtac--actcagaatatattatacatttctcact |
94 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||| ||||||||||||| |||||||||||| | ||||| |||||||||||| ||||| ||| |
|
|
| T |
267943 |
tatctattcatgtcaaataatgcaagttagtaatagtatgtaacaacatcacacaatcacatccatgcatgtactcaaaatatattatacgtttctaact |
268042 |
T |
|
| Q |
95 |
attttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaaggt |
146 |
Q |
| |
|
|||| | |||||||| ||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
268043 |
atttcgtcatataaacaactaatacttatttagaaacgtaaataaaaaaggt |
268094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 28127333 - 28127397
Alignment:
| Q |
73 |
aatatattatacatttctcactattttgacatataaataactaatacttgtttaaaaacgtaaat |
137 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
28127333 |
aatacattatacaactctgactattttgacatataaataccttatacttgtttaaaaacataaat |
28127397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 28164052 - 28164097
Alignment:
| Q |
92 |
actattttgacatataaataactaatacttgtttaaaaacgtaaat |
137 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
28164052 |
actattttgacatataaatatcttatacttgtttaaaaacataaat |
28164097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 14082 - 14135
Alignment:
| Q |
7 |
ttcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatccatgt |
64 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
14082 |
ttcatgtccaataagataagttagtatg----tgacaacatcacaatcacatccatgt |
14135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3142 - 3196
Alignment:
| Q |
1 |
tatctattcatgtccaataagataagttagtatgtaattaacaacatcacaatcacatc |
59 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
3142 |
tatctattcatgtccagtaagataagttagtatg----tgacaacatcacaatcacatc |
3196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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