View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16582_high_7 (Length: 227)

Name: NF16582_high_7
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16582_high_7
NF16582_high_7
[»] chr1 (22 HSPs)
chr1 (116-177)||(26371972-26372033)
chr1 (167-225)||(52827336-52827395)
chr1 (181-227)||(45150022-45150068)
chr1 (169-225)||(35594208-35594265)
chr1 (178-227)||(41364829-41364878)
chr1 (174-227)||(45157260-45157313)
chr1 (168-227)||(11436032-11436092)
chr1 (177-225)||(14999284-14999332)
chr1 (178-225)||(39699820-39699867)
chr1 (170-224)||(41366184-41366239)
chr1 (176-225)||(52274966-52275016)
chr1 (177-226)||(7674527-7674576)
chr1 (176-227)||(4059520-4059572)
chr1 (177-227)||(23980517-23980568)
chr1 (177-226)||(11437251-11437301)
chr1 (170-227)||(37526928-37526986)
chr1 (177-225)||(24422799-24422848)
chr1 (163-227)||(50680319-50680381)
chr1 (167-227)||(51684355-51684416)
chr1 (176-227)||(24426126-24426178)
chr1 (176-227)||(24750023-24750075)
chr1 (178-227)||(39222524-39222575)
[»] chr8 (23 HSPs)
chr8 (1-65)||(30338459-30338523)
chr8 (171-227)||(12353411-12353467)
chr8 (173-225)||(22221417-22221470)
chr8 (173-225)||(22227759-22227812)
chr8 (177-227)||(10007814-10007865)
chr8 (177-227)||(5513981-5514031)
chr8 (178-227)||(10006344-10006394)
chr8 (167-225)||(32207378-32207435)
chr8 (177-226)||(19391387-19391436)
chr8 (176-224)||(5003152-5003199)
chr8 (187-227)||(18970920-18970960)
chr8 (187-227)||(18978029-18978069)
chr8 (175-226)||(45114568-45114620)
chr8 (82-113)||(30338410-30338441)
chr8 (178-227)||(24483143-24483193)
chr8 (181-227)||(29968388-29968434)
chr8 (170-227)||(38980095-38980153)
chr8 (170-227)||(39011192-39011250)
chr8 (178-227)||(3819489-3819538)
chr8 (179-227)||(18979171-18979220)
chr8 (176-227)||(5192270-5192322)
chr8 (177-224)||(11288914-11288962)
chr8 (177-225)||(24122882-24122930)
[»] chr4 (30 HSPs)
chr4 (175-227)||(14868887-14868939)
chr4 (175-227)||(14876995-14877047)
chr4 (166-227)||(49308078-49308139)
chr4 (177-226)||(17388263-17388312)
chr4 (177-227)||(1290249-1290300)
chr4 (177-227)||(5526177-5526227)
chr4 (172-226)||(17382987-17383041)
chr4 (177-225)||(26421675-26421723)
chr4 (174-225)||(5525356-5525407)
chr4 (180-227)||(19750626-19750673)
chr4 (180-227)||(19789133-19789180)
chr4 (177-227)||(25685873-25685924)
chr4 (83-117)||(1688188-1688222)
chr4 (176-225)||(10470544-10470594)
chr4 (178-227)||(10471439-10471489)
chr4 (175-225)||(13386585-13386637)
chr4 (178-225)||(25684934-25684982)
chr4 (167-226)||(48781097-48781157)
chr4 (177-227)||(1963195-1963246)
chr4 (177-227)||(13509410-13509460)
chr4 (177-227)||(49306774-49306824)
chr4 (177-225)||(1835155-1835204)
chr4 (175-227)||(3928909-3928962)
chr4 (175-227)||(15058817-15058870)
chr4 (175-227)||(25011988-25012041)
chr4 (167-227)||(47869907-47869968)
chr4 (177-225)||(48780247-48780296)
chr4 (176-227)||(3927664-3927716)
chr4 (176-227)||(8758888-8758940)
chr4 (177-227)||(13386013-13386065)
[»] chr7 (18 HSPs)
chr7 (177-227)||(34174034-34174084)
chr7 (177-226)||(127336-127385)
chr7 (167-227)||(8527048-8527109)
chr7 (175-225)||(7500452-7500502)
chr7 (169-225)||(20636874-20636931)
chr7 (177-227)||(3227645-3227696)
chr7 (177-227)||(7501903-7501954)
chr7 (177-227)||(17782604-17782655)
chr7 (178-227)||(18371424-18371474)
chr7 (170-227)||(20163607-20163665)
chr7 (179-227)||(3227109-3227157)
chr7 (177-227)||(22630503-22630554)
chr7 (177-227)||(31949321-31949372)
chr7 (177-227)||(31949853-31949904)
chr7 (178-224)||(47525421-47525468)
chr7 (180-225)||(17781663-17781709)
chr7 (176-225)||(27869194-27869244)
chr7 (176-224)||(42271589-42271638)
[»] chr6 (15 HSPs)
chr6 (177-227)||(27322119-27322169)
chr6 (1-65)||(18989991-18990053)
chr6 (177-227)||(27318314-27318364)
chr6 (169-225)||(3721603-3721660)
chr6 (174-225)||(8660256-8660308)
chr6 (177-227)||(7316345-7316396)
chr6 (177-227)||(8659264-8659315)
chr6 (177-227)||(8821872-8821923)
chr6 (178-225)||(16703570-16703616)
chr6 (178-227)||(7314880-7314930)
chr6 (177-225)||(3722560-3722609)
chr6 (177-225)||(16704550-16704599)
chr6 (181-225)||(34834632-34834677)
chr6 (82-114)||(11694242-11694274)
chr6 (177-224)||(35102490-35102538)
[»] chr3 (34 HSPs)
chr3 (177-227)||(5029734-5029784)
chr3 (167-227)||(5001189-5001250)
chr3 (181-227)||(7268878-7268924)
chr3 (167-227)||(29932749-29932810)
chr3 (167-227)||(29981903-29981964)
chr3 (168-227)||(12703551-12703610)
chr3 (172-227)||(28262187-28262242)
chr3 (169-227)||(47610631-47610690)
chr3 (177-227)||(47615599-47615650)
chr3 (175-225)||(54540843-54540894)
chr3 (170-227)||(3328805-3328863)
chr3 (181-227)||(7267647-7267693)
chr3 (177-227)||(12700174-12700223)
chr3 (177-223)||(51470510-51470556)
chr3 (167-227)||(22776863-22776924)
chr3 (170-226)||(8456470-8456526)
chr3 (177-224)||(29931225-29931273)
chr3 (177-224)||(29980379-29980427)
chr3 (177-224)||(11671395-11671442)
chr3 (177-227)||(19984848-19984899)
chr3 (177-227)||(22447739-22447790)
chr3 (178-224)||(27852753-27852800)
chr3 (177-227)||(52276303-52276354)
chr3 (177-227)||(52281598-52281649)
chr3 (185-227)||(22775783-22775825)
chr3 (178-227)||(47614185-47614235)
chr3 (178-227)||(51469972-51470022)
chr3 (178-227)||(52840655-52840705)
chr3 (178-226)||(535834-535883)
chr3 (177-225)||(7758401-7758450)
chr3 (177-225)||(47609696-47609745)
chr3 (176-224)||(54539753-54539802)
chr3 (178-225)||(8338940-8338988)
chr3 (176-227)||(24516458-24516510)
[»] chr5 (19 HSPs)
chr5 (1-65)||(23915469-23915531)
chr5 (175-227)||(19752909-19752961)
chr5 (166-227)||(22940673-22940738)
chr5 (178-224)||(20214196-20214242)
chr5 (167-225)||(28539873-28539931)
chr5 (177-227)||(5730440-5730492)
chr5 (177-225)||(5777900-5777947)
chr5 (177-224)||(5778890-5778938)
chr5 (172-227)||(18485132-18485188)
chr5 (177-224)||(25523068-25523116)
chr5 (177-227)||(18486953-18487004)
chr5 (177-227)||(18695256-18695307)
chr5 (177-227)||(23765419-23765470)
chr5 (177-227)||(23815267-23815318)
chr5 (176-227)||(25556875-25556926)
chr5 (177-227)||(19754181-19754233)
chr5 (177-225)||(28538675-28538724)
chr5 (178-225)||(25056434-25056482)
chr5 (177-224)||(33160340-33160388)
[»] chr2 (17 HSPs)
chr2 (169-227)||(36449769-36449828)
chr2 (174-227)||(802642-802695)
chr2 (176-226)||(22848189-22848240)
chr2 (177-226)||(7899934-7899984)
chr2 (177-226)||(11938840-11938890)
chr2 (167-224)||(38840547-38840605)
chr2 (181-226)||(36450973-36451018)
chr2 (179-227)||(1033212-1033260)
chr2 (177-225)||(18797245-18797295)
chr2 (177-227)||(18868923-18868974)
chr2 (177-227)||(18904366-18904417)
chr2 (176-227)||(21837306-21837356)
chr2 (178-227)||(1034520-1034570)
chr2 (179-227)||(13030293-13030340)
chr2 (177-224)||(18906041-18906089)
chr2 (167-207)||(20347489-20347529)
chr2 (176-227)||(22588004-22588056)
[»] scaffold0369 (1 HSPs)
scaffold0369 (166-199)||(13181-13214)
[»] scaffold0632 (1 HSPs)
scaffold0632 (177-225)||(3361-3409)
[»] scaffold0186 (1 HSPs)
scaffold0186 (178-225)||(23081-23127)
[»] scaffold0419 (1 HSPs)
scaffold0419 (178-227)||(2961-3011)
[»] scaffold0294 (1 HSPs)
scaffold0294 (177-225)||(5491-5540)
[»] scaffold0025 (1 HSPs)
scaffold0025 (175-227)||(62072-62125)
[»] scaffold0607 (1 HSPs)
scaffold0607 (176-227)||(2046-2098)
[»] scaffold0049 (1 HSPs)
scaffold0049 (167-199)||(7495-7527)


Alignment Details
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 26372033 - 26371972
Alignment:
Q  116 acaatttaatttctcccatatattagagtcacatgcaatagaatgcatgcaaataaaataaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26372033 acaatttaatttctcccatatattagagtcacatgcaatagaatgcatgcaaataaaataaa 26371972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 52827336 - 52827395
Alignment:
Q  167 aataaaataaaggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  52827336 aataaaaaaaaggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttg 52827395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 45150068 - 45150022
Alignment:
Q  181 taaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  45150068 taaagtgcacttttcccccctaactttcaaaaacttgcaattttggc 45150022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 35594208 - 35594265
Alignment:
Q  169 taaaataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttg 225  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  35594208 taaattaaaggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttg 35594265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 41364829 - 41364878
Alignment:
Q  178 ggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  41364829 ggctaaagtgcacttttctcccctaactttcaaaaacttgcaattttggc 41364878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 45157313 - 45157260
Alignment:
Q  174 taaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  45157313 taaaggctaaagtgcactttccccccctaagtttcaaaaacttgcaattttggc 45157260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 11436032 - 11436092
Alignment:
Q  168 ataaaataaaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    |||||| |||||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  11436032 ataaaaaaaaggctaaagtgcacttttccccctttaactttcaaaaacttgcaattttggc 11436092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 14999284 - 14999332
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  14999284 aggctaaagtgtacttttcccccctaactttcaaaaacttgcaattttg 14999332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 39699867 - 39699820
Alignment:
Q  178 ggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  39699867 ggctaaagtgcacttttcccccctaactttcaataacttgcaattttg 39699820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 41366239 - 41366184
Alignment:
Q  170 aaaataaaggctaaagtgcacttttcccc-cctatctttcaaaatcttgcaatttt 224  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| | |||||||||    
T  41366239 aaaataaaggctaaagtgcacttttcccctcctaactttcaaaaacatgcaatttt 41366184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 52274966 - 52275016
Alignment:
Q  176 aaggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  52274966 aaggctaaagtgcacttttacccccctaactttcaaaaacttgcaattttg 52275016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 7674527 - 7674576
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttgg 226  Q
    |||||||||||| ||||||||||||| |||| |||| |||||||||||||    
T  7674527 aggctaaagtgcccttttcccccctaacttttaaaaacttgcaattttgg 7674576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 4059520 - 4059572
Alignment:
Q  176 aaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||    
T  4059520 aaggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttggc 4059572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 23980568 - 23980517
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  23980568 aggctaaagtgcacttttccccctctaactttaaaaaacttgcaattttggc 23980517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 11437301 - 11437251
Alignment:
Q  177 aggctaaagtgcacttttcccccct-atctttcaaaatcttgcaattttgg 226  Q
    |||||||||||||||||| |||||| | ||||||||| |||||||||||||    
T  11437301 aggctaaagtgcactttttcccccttaactttcaaaaacttgcaattttgg 11437251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 37526986 - 37526928
Alignment:
Q  170 aaaataaaggctaaagtgcacttttcccccct-atctttcaaaatcttgcaattttggc 227  Q
    ||||| |||| ||||||| ||||||||||||| | ||||||||| ||||||||||||||    
T  37526986 aaaattaaggttaaagtgtacttttccccccttaactttcaaaaacttgcaattttggc 37526928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 24422799 - 24422848
Alignment:
Q  177 aggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||| ||||| || ||||||||| ||||||||||||    
T  24422799 aggctaaagtgcacttttacccccttaactttcaaaaacttgcaattttg 24422848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 50680319 - 50680381
Alignment:
Q  163 tgcaaataaaataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||  || ||||||||| ||||||||| || ||| ||||| ||||||||||||||    
T  50680319 tgcaaataaaata--ggttaaagtgcatttttcccccttaacttccaaaaacttgcaattttggc 50680381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 51684355 - 51684416
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||| | ||||||||||||||||||||||| || |||| ||||  |||||||||||||    
T  51684355 aataaaatcatggctaaagtgcacttttccccccttaacttttaaaaagttgcaattttggc 51684416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 24426178 - 24426126
Alignment:
Q  176 aaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    |||| ||||||||||||| ||||| ||| ||||||||| ||||||||||||||    
T  24426178 aaggttaaagtgcactttcccccctctaactttcaaaaacttgcaattttggc 24426126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 24750075 - 24750023
Alignment:
Q  176 aaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||| |||||||||| |||||||| ||| ||||| |||||||||||||    
T  24750075 aaggctaaactgcacttttcgccccctatgttttaaaatgttgcaattttggc 24750023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 39222575 - 39222524
Alignment:
Q  178 ggctaaagtgcacttttcccccctat--ctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||| |||||| |  ||||||||| ||||||||||||||    
T  39222575 ggctaaagtgcacttttaccccctttaactttcaaaaacttgcaattttggc 39222524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30338523 - 30338459
Alignment:
Q  1 tcttctccatatatataggggaaagacttccaattaccaattgacgaaaatacccctataagggc 65  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30338523 tcttctccatatatataagggaaagacttccaattaccaattgacgaaaatacccctataagggc 30338459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 12353467 - 12353411
Alignment:
Q  171 aaataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  12353467 aaataaaggctaaagtgcacttttcccccttaactttcaaaaacttgcaattttggc 12353411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 22221470 - 22221417
Alignment:
Q  173 ataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  22221470 ataaaggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttg 22221417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 22227812 - 22227759
Alignment:
Q  173 ataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  22227812 ataaaggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttg 22227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 10007865 - 10007814
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  10007865 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggc 10007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 5513981 - 5514031
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||| ||||||| ||||||||| ||| ||||||||||    
T  5513981 aggctaaagtgcacttttaccccctaactttcaaaaacttccaattttggc 5514031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 10006344 - 10006394
Alignment:
Q  178 ggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  10006344 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 10006394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 32207435 - 32207378
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||| |||||||||||||||| ||||||||||| | ||||||| ||||||||||||    
T  32207435 aataaaaaaaaggctaaagtgcac-tttcccccctaaccttcaaaaacttgcaattttg 32207378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 19391387 - 19391436
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttgg 226  Q
    |||||||| |||||||||| ||||||| ||||||||| ||||||||||||    
T  19391387 aggctaaactgcacttttcgcccctatgtttcaaaatgttgcaattttgg 19391436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 5003199 - 5003152
Alignment:
Q  176 aaggctaaagtgcacttttcccccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  5003199 aaggctaaagcgcacttt-cccccctaactttcaaaatcttgcaatttt 5003152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 18970920 - 18970960
Alignment:
Q  187 gcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  18970920 gcacttttcccccctaactttcaaaatctttcaattttggc 18970960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 18978029 - 18978069
Alignment:
Q  187 gcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  18978029 gcacttttcccccctaactttcaaaatctttcaattttggc 18978069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 45114620 - 45114568
Alignment:
Q  175 aaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttgg 226  Q
    ||||||| |||||||||||||| |||||| ||||||||| |||||||||||||    
T  45114620 aaaggctgaagtgcacttttccgcccctaactttcaaaaacttgcaattttgg 45114568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 30338441 - 30338410
Alignment:
Q  82 tggacatggattgtcctatatagtttagtaga 113  Q
    ||||||||||||||||||||||||||||||||    
T  30338441 tggacatggattgtcctatatagtttagtaga 30338410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 24483143 - 24483193
Alignment:
Q  178 ggctaaagtgcacttttcccc-cctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||||||||||    
T  24483143 ggctaaagtgcacttttcccctcctaattttcaaaaacttgcaattttggc 24483193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 29968434 - 29968388
Alignment:
Q  181 taaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||||    
T  29968434 taaagtgcacttttcccccttaacttttaaaaacttgcaattttggc 29968388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 38980153 - 38980095
Alignment:
Q  170 aaaataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    |||| |||||||||||||||||||||| |||||| |||||||||  |||| ||||||||    
T  38980153 aaaaaaaaggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggc 38980095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 39011250 - 39011192
Alignment:
Q  170 aaaataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    |||| |||||||||||||||||||||| |||||| |||||||||  |||| ||||||||    
T  39011250 aaaaaaaaggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggc 39011192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 3819489 - 3819538
Alignment:
Q  178 ggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||| ||||||||| ||  ||||||||| |||||||||||||    
T  3819489 ggctaaagtgcatttttcccccttaagtttcaaaatgttgcaattttggc 3819538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 18979220 - 18979171
Alignment:
Q  179 gctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||| |||||| ||||||| | ||||||||||||||    
T  18979220 gctaaagtgcacttttccccccctaactttcaacaacttgcaattttggc 18979171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 5192270 - 5192322
Alignment:
Q  176 aaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||| | |||||||| |||||||| ||||||||| |||||||||||||    
T  5192270 aaggctaaacttcacttttcgccccctatgtttcaaaatgttgcaattttggc 5192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 11288962 - 11288914
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||| | |||||| ||||||||| |||||||||||    
T  11288962 aggctaaagtgcactttttcacccctaactttcaaaaacttgcaatttt 11288914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 24122882 - 24122930
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||| |||||||||||| |||| ||||  |||||||||||    
T  24122882 aggctaaagtgcatttttcccccctaactttaaaaaatttgcaattttg 24122930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 14868887 - 14868939
Alignment:
Q  175 aaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14868887 aaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 14868939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 14877047 - 14876995
Alignment:
Q  175 aaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14877047 aaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 14876995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 49308139 - 49308078
Alignment:
Q  166 aaataaaataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  49308139 aaataaaaaataggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggc 49308078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 17388312 - 17388263
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttgg 226  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  17388312 aggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttgg 17388263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 1290300 - 1290249
Alignment:
Q  177 aggctaaagtgcacttttcccccct-atctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  1290300 aggctaaagtgcacttttccccccttaactttcaaaatcttgcaattttggc 1290249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 5526227 - 5526177
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  5526227 aggctaaagtgcacttttcccctctaactttcaaaaacttgcaattttggc 5526177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 17382987 - 17383041
Alignment:
Q  172 aataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttgg 226  Q
    |||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  17382987 aatataggctaaagtgcacttttctcccctaactttcaaaaacttgcaattttgg 17383041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 26421723 - 26421675
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  26421723 aggctaaagtgcacttttcccctctaactttcaaaaacttgcaattttg 26421675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 5525356 - 5525407
Alignment:
Q  174 taaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||| || |||||||||||| ||||||||| ||||||||||||    
T  5525356 taaaggctaaagtacatttttcccccctaactttcaaaaacttgcaattttg 5525407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 19750673 - 19750626
Alignment:
Q  180 ctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  19750673 ctaaagtgcacttttcccccctaacttttaaaaacttgcaattttggc 19750626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 19789133 - 19789180
Alignment:
Q  180 ctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  19789133 ctaaagtgcacttttcccccctaacttttaaaaacttgcaattttggc 19789180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 25685924 - 25685873
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  25685924 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 25685873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 1688222 - 1688188
Alignment:
Q  83 ggacatggattgtcctatatagtttagtagaagac 117  Q
    |||||||||||||||||||||||||||||||||||    
T  1688222 ggacatggattgtcctatatagtttagtagaagac 1688188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 10470544 - 10470594
Alignment:
Q  176 aaggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  10470544 aaggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttg 10470594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 10471489 - 10471439
Alignment:
Q  178 ggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  10471489 ggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggc 10471439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 13386637 - 13386585
Alignment:
Q  175 aaaggctaaagtgcactttt--cccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||  |||||||| ||||||||| ||||||||||||    
T  13386637 aaaggctaaagtgcactttttccccccctaactttcaaaaacttgcaattttg 13386585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 25684934 - 25684982
Alignment:
Q  178 ggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  25684934 ggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttg 25684982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 48781157 - 48781097
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttgg 226  Q
    ||||| || |||||||||||||||||||||||| ||| |||||||||  ||||||||||||    
T  48781157 aataatatgaaggctaaagtgcacttttccccctctaactttcaaaaatttgcaattttgg 48781097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 1963195 - 1963246
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||| || |||||||||  |||||||||||||    
T  1963195 aggctaaagtgcacttttccccccttaactttcaaaaagttgcaattttggc 1963246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 13509460 - 13509410
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||| |||||||||||||| |||| ||||  |||||||||||||    
T  13509460 aggctaaagtgtacttttcccccctaacttttaaaaaattgcaattttggc 13509410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 49306774 - 49306824
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||  |||| | ||||||||| ||||||||||||||    
T  49306774 aggctaaagtgcacttttttcccccaactttcaaaaacttgcaattttggc 49306824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 1835204 - 1835155
Alignment:
Q  177 aggctaaagtgcacttttccc-ccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||  ||||| ||||||||| ||||||||||||    
T  1835204 aggctaaagtgcacttttccatccctaactttcaaaaacttgcaattttg 1835155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 3928962 - 3928909
Alignment:
Q  175 aaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||| |||||| |||||||||  |||| ||||||||    
T  3928962 aaaggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggc 3928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 15058817 - 15058870
Alignment:
Q  175 aaaggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||  |||||||| ||||||||| |||| ||||||||    
T  15058817 aaaggctaaagtgcacttttggccccctatgtttcaaaatgttgcgattttggc 15058870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 25012041 - 25011988
Alignment:
Q  175 aaaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||| |||||||||| |||||||| ||||| ||| |||||||||||||    
T  25012041 aaaggctaaactgcacttttcgccccctatgtttcataatgttgcaattttggc 25011988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 47869968 - 47869907
Alignment:
Q  167 aataaaataaaggctaaagtgc-acttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||| | |||| |||||||| ||||||||| |||  ||||||||    
T  47869968 aataaaataaaggctaaagtgcaatttttgccccctatatttcaaaatgttgtgattttggc 47869907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 48780247 - 48780296
Alignment:
Q  177 aggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||| |||||||| |||| |||| ||||||||||||    
T  48780247 aggctaaagtgcacttttccccccctaacttttaaaaacttgcaattttg 48780296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 3927664 - 3927716
Alignment:
Q  176 aaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||| ||| |||| ||||| |||| ||||||||    
T  3927664 aaggctaaagtgcacttttccccctctaacttttaaaatgttgcgattttggc 3927716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 8758940 - 8758888
Alignment:
Q  176 aaggctaaagtgcacttttcccccct-atctttcaaaatcttgcaattttggc 227  Q
    |||| |||| |||||||||||||||| | ||||||||| ||||||||||||||    
T  8758940 aaggttaaaatgcacttttccccccttaactttcaaaaacttgcaattttggc 8758888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 13386013 - 13386065
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttc-aaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||    
T  13386013 aggctaaagtgcacttttccccctctaactttcaaaaaacttgcaattttggc 13386065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 34174084 - 34174034
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34174084 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 34174034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 127336 - 127385
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttgg 226  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  127336 aggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttgg 127385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 8527109 - 8527048
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||    
T  8527109 aataaaataaaggctaaagtgcacttttcgccccctatatttcaaaatgttgcgattttggc 8527048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 7500452 - 7500502
Alignment:
Q  175 aaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  7500452 aaaggctaaagtgcacttttcccccttaactttcaaaaacttgcaattttg 7500502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 20636931 - 20636874
Alignment:
Q  169 taaaataaaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  20636931 taaaataaaggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttg 20636874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 3227696 - 3227645
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  3227696 aggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttggc 3227645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 7501954 - 7501903
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  7501954 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 7501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 17782655 - 17782604
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  17782655 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 17782604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 18371424 - 18371474
Alignment:
Q  178 ggctaaagtgcacttttcccc-cctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  18371424 ggctaaagtgcacttttcccctcctaactttcaaaaacttgcaattttggc 18371474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 20163665 - 20163607
Alignment:
Q  170 aaaataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    |||| |||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||    
T  20163665 aaaaaaaaggctaaagtgcacttctccacccctaactttcaaaaacttgcaattttggc 20163607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 3227109 - 3227157
Alignment:
Q  179 gctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  3227109 gctaaagtgcactttccccccctaattttcaaaaacttgcaattttggc 3227157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 22630554 - 22630503
Alignment:
Q  177 aggctaaagtgcacttttccc-ccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||| || || ||||||||| ||||||||||||||    
T  22630554 aggctaaagtgcacttttccctccataactttcaaaaacttgcaattttggc 22630503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 31949321 - 31949372
Alignment:
Q  177 aggctaaagtgcacttttccc-ccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  31949321 aggctaaagtgcacttttccctccctaattttcaaaaacttgcaattttggc 31949372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 31949904 - 31949853
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||| |||||||| || ||||||||| ||||||||||||||    
T  31949904 aggctaaagtgcactcttccccccctaactttcaaaaacttgcaattttggc 31949853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 47525468 - 47525421
Alignment:
Q  178 ggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  47525468 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaatttt 47525421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 17781663 - 17781709
Alignment:
Q  180 ctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||    
T  17781663 ctaaagtgcacttttccccccctaactttcaaaaacttgcaattttg 17781709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 27869194 - 27869244
Alignment:
Q  176 aaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  27869194 aaggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttg 27869244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 42271638 - 42271589
Alignment:
Q  176 aaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||||| |||||||| ||| ||||| ||||||||||    
T  42271638 aaggctaaagtgcacttttcgccccctatgttttaaaatgttgcaatttt 42271589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 27322169 - 27322119
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27322169 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 27322119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18989991 - 18990053
Alignment:
Q  1 tcttctccatatatataggggaaagacttccaattaccaattgacgaaaatacccctataagggc 65  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  18989991 tcttctccatatatat--gggaaagacttccaattaccaattgacgaaaatacccttataagggc 18990053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 27318314 - 27318364
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  27318314 aggctaaagtgcaccttttccccctatctttcaaaatcttgcaattttggc 27318364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 3721603 - 3721660
Alignment:
Q  169 taaaataaaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttg 225  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  3721603 taaaacaaaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttg 3721660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 8660308 - 8660256
Alignment:
Q  174 taaaggctaaagtgcacttttcccc-cctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  8660308 taaaggctaaagtgcacttttcccctcctaactttcaaaaacttgcaattttg 8660256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 7316396 - 7316345
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  7316396 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggc 7316345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 8659264 - 8659315
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  8659264 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 8659315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 8821872 - 8821923
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  8821872 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 8821923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 16703570 - 16703616
Alignment:
Q  178 ggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  16703570 ggctaaagtgcacttttcccc-ctatctttcaaaaacttgcaattttg 16703616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 7314880 - 7314930
Alignment:
Q  178 ggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  7314880 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 7314930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 3722609 - 3722560
Alignment:
Q  177 aggctaaagtgcacttttccc-ccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  3722609 aggctaaagtgcacttttccctccctaactttcaaaaacttgcaattttg 3722560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 16704599 - 16704550
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||| ||| || ||||||||| ||||||||||||    
T  16704599 aggctaaagtgcacttttcctcccttaactttcaaaaacttgcaattttg 16704550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 34834677 - 34834632
Alignment:
Q  181 taaagtgcacttttccc-ccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  34834677 taaagtgcacttttccctccctaactttcaaaaacttgcaattttg 34834632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 11694242 - 11694274
Alignment:
Q  82 tggacatggattgtcctatatagtttagtagaa 114  Q
    ||||||| |||||||||||||||||||||||||    
T  11694242 tggacattgattgtcctatatagtttagtagaa 11694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 35102490 - 35102538
Alignment:
Q  177 aggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaatttt 224  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| |||||    
T  35102490 aggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgatttt 35102538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 5029784 - 5029734
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5029784 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 5029734  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 5001189 - 5001250
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5001189 aataaaaaataggctaaagtgcacttttcctcccctatctttcaaaatcttgcaattttggc 5001250  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 7268924 - 7268878
Alignment:
Q  181 taaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  7268924 taaagtgcacttttcccccctaactttcaaaaacttgcaattttggc 7268878  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 29932810 - 29932749
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    |||| ||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  29932810 aatagaattaaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 29932749  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 29981964 - 29981903
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    |||| ||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  29981964 aatagaattaaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 29981903  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 12703610 - 12703551
Alignment:
Q  168 ataaaataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||  ||| |||||||||    
T  12703610 ataaaataaaggctaaagtgcactttttccctctaactttcaaaaatttgtaattttggc 12703551  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 28262187 - 28262242
Alignment:
Q  172 aataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||| |||||||||||||||||||||||||| |||||||||  |||| ||||||||    
T  28262187 aatataggctaaagtgcacttttcccccctaactttcaaaacgttgcgattttggc 28262242  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 47610690 - 47610631
Alignment:
Q  169 taaaataaaggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||| ||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  47610690 taaaatataggttaaagtgcacttttccccctctaactttcaaaaacttgcaattttggc 47610631  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 47615650 - 47615599
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  47615650 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggc 47615599  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 54540894 - 54540843
Alignment:
Q  175 aaaggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  54540894 aaaggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttg 54540843  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 3328805 - 3328863
Alignment:
Q  170 aaaataaaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||| || ||||||||||    
T  3328805 aaaataaaggctaaactgcacttttcgccccctatgtttcaaaatgttacaattttggc 3328863  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 7267647 - 7267693
Alignment:
Q  181 taaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||    
T  7267647 taaagtgcacttttcccccttaactttcaaaaacttgcaattttggc 7267693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 12700174 - 12700223
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  12700174 aggctaaagtgcacttt-cccccctaactttcaaaaacttgcaattttggc 12700223  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 51470556 - 51470510
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattt 223  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  51470556 aggctaaagtgcactcttcccccctaactttcaaaaacttgcaattt 51470510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 22776924 - 22776863
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||| |||||||||||||||||||| |||||| |||||| ||  |||||||||||||    
T  22776924 aataaaatataggctaaagtgcacttttccacccctaactttcagaaagttgcaattttggc 22776863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 8456470 - 8456526
Alignment:
Q  170 aaaataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttgg 226  Q
    |||| ||| |||||||||||||||| |||||||  |||||||| |||||||||||||    
T  8456470 aaaaaaaaagctaaagtgcactttttccccctaattttcaaaaacttgcaattttgg 8456526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 29931225 - 29931273
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  29931225 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaatttt 29931273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 29980379 - 29980427
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  29980379 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaatttt 29980427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 11671442 - 11671395
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||| || |||| ||||||||| |||||||||||    
T  11671442 aggctaaagtgcactttttccgcctaactttcaaaaacttgcaatttt 11671395  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 19984848 - 19984899
Alignment:
Q  177 aggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  19984848 aggctaaagtgcacttttccccccctaagtttcaaaaacttgcaattttggc 19984899  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 22447739 - 22447790
Alignment:
Q  177 aggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  22447739 aggctaaactgcacttttcgccccctatgtttcaaaatgttgcaattttggc 22447790  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 27852753 - 27852800
Alignment:
Q  178 ggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  27852753 ggctaaagtgcacttttcgccccctatgtttcaaaatgttgcaatttt 27852800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 52276303 - 52276354
Alignment:
Q  177 aggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||||||||    
T  52276303 aggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggc 52276354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 52281649 - 52281598
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||| ||||||||||||||||  |||| ||||||||    
T  52281649 aggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggc 52281598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 22775783 - 22775825
Alignment:
Q  185 gtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  22775783 gtgcacttttcccccctaactttcaaaaagttgcaattttggc 22775825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 47614185 - 47614235
Alignment:
Q  178 ggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||| |||| ||| ||||||||| ||||||||||||||    
T  47614185 ggctaaagtgcactttttcccctctaactttcaaaaacttgcaattttggc 47614235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 51469972 - 51470022
Alignment:
Q  178 ggctaaagtgcacttttccc-ccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  51469972 ggctaaagtgcacttttccctccctaattttcaaaaacttgcaattttggc 51470022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 52840705 - 52840655
Alignment:
Q  178 ggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||| ||||||| |||||| ||||||||| ||||||||||||||    
T  52840705 ggctaaagtgcccttttcctcccctaactttcaaaaacttgcaattttggc 52840655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 535883 - 535834
Alignment:
Q  178 ggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttgg 226  Q
    |||||||||| |||||||| |||||| ||||||||| |||||||||||||    
T  535883 ggctaaagtgtacttttccacccctaactttcaaaaacttgcaattttgg 535834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 7758401 - 7758450
Alignment:
Q  177 aggctaaagtgcacttttcccccct-atctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||| |||||| | ||||||||| ||||||||||||    
T  7758401 aggctaaagtgcactttttcccccttaactttcaaaaacttgcaattttg 7758450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 47609696 - 47609745
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttg 225  Q
    |||||||| ||||||||||||||| || ||||||||| ||||||||||||    
T  47609696 aggctaaaatgcacttttccccccctaactttcaaaaacttgcaattttg 47609745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 54539753 - 54539802
Alignment:
Q  176 aaggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaatttt 224  Q
    ||||||||||||||||||||| ||| || ||||||||| |||||||||||    
T  54539753 aaggctaaagtgcacttttccacccttaactttcaaaaacttgcaatttt 54539802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 8338940 - 8338988
Alignment:
Q  178 ggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  8338940 ggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttg 8338988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 24516458 - 24516510
Alignment:
Q  176 aaggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||| ||||||||||||| |||||||| |||| |||| ||||||||||||||    
T  24516458 aaggccaaagtgcactttttcccccctaactttaaaaaacttgcaattttggc 24516510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23915531 - 23915469
Alignment:
Q  1 tcttctccatatatataggggaaagacttccaattaccaattgacgaaaatacccctataagggc 65  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  23915531 tcttctccatatatat--gggaaagacttccaattaccaattgacgaaaatacccttataagggc 23915469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 19752909 - 19752961
Alignment:
Q  175 aaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  19752909 aaaggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggc 19752961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 22940738 - 22940673
Alignment:
Q  166 aaataaaataaa---ggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||   ||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  22940738 aaataaaataaacttggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggc 22940673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 20214196 - 20214242
Alignment:
Q  178 ggctaaagtgcacttttcccccctatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||||||| || ||||||||| |||||||||||    
T  20214196 ggctaaagtgcacttttcccccttaactttcaaaaacttgcaatttt 20214242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 28539931 - 28539873
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||| ||||| ||||||||| |||||||||||| |||| |||| ||||||||||||    
T  28539931 aataaaaaaaaggttaaagtgcatttttcccccctaacttttaaaaacttgcaattttg 28539873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 5730440 - 5730492
Alignment:
Q  177 aggctaaagtgcacttttcccccc--tatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  5730440 aggctaaagtgcacttttcccccccttaactttcaaaaacttgcaattttggc 5730492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 5777900 - 5777947
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  5777900 aggctaaagtgcacttt-cccccctaactttcaaaaacttgcaattttg 5777947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 5778938 - 5778890
Alignment:
Q  177 aggctaaagtgcacttttccccc-ctatctttcaaaatcttgcaatttt 224  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  5778938 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaatttt 5778890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 18485132 - 18485188
Alignment:
Q  172 aataaaggctaaagtgcac-ttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||| |||||||| ||| |||| |||| ||||||||||||||    
T  18485132 aataaaggctaaagtgcactttttcccctctaactttaaaaaacttgcaattttggc 18485188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 25523068 - 25523116
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  25523068 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaatttt 25523116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 18487004 - 18486953
Alignment:
Q  177 aggctaaagtgcacttttcccccct-atctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||| ||||||| | ||||||||| ||||||||||||||    
T  18487004 aggctaaagtgcactttcccccccttaactttcaaaaacttgcaattttggc 18486953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 18695307 - 18695256
Alignment:
Q  177 aggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| ||||||||    
T  18695307 aggctaaagtgcacttttcgccccctatgtttcaaaatattgcgattttggc 18695256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 23765419 - 23765470
Alignment:
Q  177 aggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  23765419 aggctaaactgcacttttcgccccctatgtttcaaaatgttgcaattttggc 23765470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 23815267 - 23815318
Alignment:
Q  177 aggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  23815267 aggctaaactgcacttttcgccccctatgtttcaaaatgttgcaattttggc 23815318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 25556875 - 25556926
Alignment:
Q  176 aaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||| ||||||| || ||||||| ||||||||| |||||||||||||    
T  25556875 aaggctaaactgcacttatcgcccctatgtttcaaaatgttgcaattttggc 25556926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 19754233 - 19754181
Alignment:
Q  177 aggctaaagtgcactttt--cccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||| ||||  |||||||| ||||||||| ||||||||||||||    
T  19754233 aggctaaagtgcatttttttcccccctaactttcaaaaacttgcaattttggc 19754181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 28538675 - 28538724
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||| ||| || ||||||||| ||||||||||||    
T  28538675 aggctaaagtgcacttttccacccgtaactttcaaaaacttgcaattttg 28538724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 25056482 - 25056434
Alignment:
Q  178 ggctaaagtgcacttttcccc-cctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||| | |||| ||||||||| ||||||||||||    
T  25056482 ggctaaagtgcacttttccactcctaactttcaaaaacttgcaattttg 25056434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 33160388 - 33160340
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaatttt 224  Q
    |||||||||||||||||||||||| ||  |||||||| |||||||||||    
T  33160388 aggctaaagtgcacttttccccccttaattttcaaaaacttgcaatttt 33160340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 36449769 - 36449828
Alignment:
Q  169 taaaataaaggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    ||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  36449769 taaaatataggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggc 36449828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 802695 - 802642
Alignment:
Q  174 taaaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||| ||||||||||||||  |||||||| ||||||||||||||    
T  802695 taaaggctaaagtgtacttttcccccctaagtttcaaaaacttgcaattttggc 802642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 22848189 - 22848240
Alignment:
Q  176 aaggctaaagtgcactttt-cccccctatctttcaaaatcttgcaattttgg 226  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  22848189 aaggctaaagtgcacttttacccccctaactttcaaaaacttgcaattttgg 22848240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 7899984 - 7899934
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttgg 226  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  7899984 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgg 7899934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 11938890 - 11938840
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttgg 226  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  11938890 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgg 11938840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 38840605 - 38840547
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaatttt 224  Q
    ||||||| | |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  38840605 aataaaaaataggctaaagtgcacttttccccccttaactttcaaaaacttgcaatttt 38840547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 36451018 - 36450973
Alignment:
Q  181 taaagtgcacttttcccccctatctttcaaaatcttgcaattttgg 226  Q
    ||||||||||||||||||| || ||||||||| |||||||||||||    
T  36451018 taaagtgcacttttcccccttaactttcaaaaacttgcaattttgg 36450973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 1033212 - 1033260
Alignment:
Q  179 gctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||| |||||||||||||| |||| |||| ||||||||||||||    
T  1033212 gctaaagtgtacttttcccccctaacttttaaaaacttgcaattttggc 1033260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 18797245 - 18797295
Alignment:
Q  177 aggctaaagtgcacttttcc--cccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  18797245 aggctaaagtgcacttttccaccccctaactttcaaaaacttgcaattttg 18797295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 18868923 - 18868974
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||| |||||||| |||||| ||||||||| ||||||||||||||    
T  18868923 aggctaaagtgtacttttccacccctaactttcaaaaacttgcaattttggc 18868974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 18904366 - 18904417
Alignment:
Q  177 aggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||||||||| || ||||||||| | ||||||||||||    
T  18904366 aggctaaagtgcacttttccccccttaactttcaaaaacgtgcaattttggc 18904417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 21837356 - 21837306
Alignment:
Q  176 aaggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||| |||| || ||||||||| ||||||||||||||    
T  21837356 aaggctaaagtgcactttttcccc-taactttcaaaaacttgcaattttggc 21837306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 1034570 - 1034520
Alignment:
Q  178 ggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    ||||||||||||||||||||||| || ||||||||| | ||||||||||||    
T  1034570 ggctaaagtgcacttttccccccttaactttcaaaaacatgcaattttggc 1034520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 13030293 - 13030340
Alignment:
Q  179 gctaaagtgcacttttcccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||| ||||||| ||||||||| |||| |||||||||    
T  13030293 gctaaagtgcactttt-ccccctaactttcaaaaacttgtaattttggc 13030340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 18906089 - 18906041
Alignment:
Q  177 aggctaaagtgcacttttcccc-cctatctttcaaaatcttgcaatttt 224  Q
    ||||||||||||||||||||||  ||| ||||||||| |||||||||||    
T  18906089 aggctaaagtgcacttttccccttctaactttcaaaaacttgcaatttt 18906041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 20347529 - 20347489
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttcccccctatcttt 207  Q
    |||| |||||||||| || ||||||||||||||||||||||    
T  20347529 aatataataaaggcttaattgcacttttcccccctatcttt 20347489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 22588056 - 22588004
Alignment:
Q  176 aaggctaaagtgcacttttcccccc-tatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||| |||||||| | || ||||||||| ||||||||||||||    
T  22588056 aaggctaaagtgcatttttcccctcataactttcaaaaacttgcaattttggc 22588004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 13181 - 13214
Alignment:
Q  166 aaataaaataaaggctaaagtgcacttttccccc 199  Q
    ||||||||||||||||||||||||||||||||||    
T  13181 aaataaaataaaggctaaagtgcacttttccccc 13214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 3409 - 3361
Alignment:
Q  177 aggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  3409 aggctaaagtgcacttttccccccttactttcaaaaacttacaattttg 3361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 23081 - 23127
Alignment:
Q  178 ggctaaagtgcacttttcccccctatctttcaaaatcttgcaattttg 225  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  23081 ggctaaagtgcactttt-ccccctaactttcaaaaacttgcaattttg 23127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 2961 - 3011
Alignment:
Q  178 ggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||||||||||| |||||||| ||||||||| |||| ||||||||    
T  2961 ggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttggc 3011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 5540 - 5491
Alignment:
Q  177 aggctaaagtgcacttttcc-cccctatctttcaaaatcttgcaattttg 225  Q
    |||||||||||||||||||| ||||||  |||||||| ||||||||||||    
T  5540 aggctaaagtgcacttttccccccctaattttcaaaaacttgcaattttg 5491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 62125 - 62072
Alignment:
Q  175 aaaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    |||||||||| |||| ||||| |||||||| ||||||||| |||||||||||||    
T  62125 aaaggctaaactgcatttttcaccccctatgtttcaaaatgttgcaattttggc 62072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 2046 - 2098
Alignment:
Q  176 aaggctaaagtgcacttttc-ccccctatctttcaaaatcttgcaattttggc 227  Q
    ||||||||| |||||||||| |||||||| ||| ||||| |||||||||||||    
T  2046 aaggctaaactgcacttttcgccccctatgttttaaaatgttgcaattttggc 2098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 7527 - 7495
Alignment:
Q  167 aataaaataaaggctaaagtgcacttttccccc 199  Q
    |||||||||||||||||||||||||| ||||||    
T  7527 aataaaataaaggctaaagtgcacttgtccccc 7495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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