View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_11 (Length: 221)
Name: NF16582_low_11
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 22842786 - 22842606
Alignment:
| Q |
17 |
ttcttagtaaggggtcctgtgcctttggctcctctgtgggagaaattcttcaaagggcataaagggtattactcaatttacgtgcactcgaatccatctt |
116 |
Q |
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| T |
22842786 |
ttcttagtaaggggtcctgtgcctttggctcctctgtgggagaaattcttcaaagggcataaagggtattactcaatttacgtgcactcgaatccatctt |
22842687 |
T |
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| Q |
117 |
acaatggttctgaagtggagagtcctgtgtttcatgataggagaattcccagtaaggttagtcaatttattcttcaattgc |
197 |
Q |
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| T |
22842686 |
acaatggttctgaagtggagagtcctgtgtttcatggtaggagaattcccagtaaggttagtcaatttattcttcaattgc |
22842606 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 49736671 - 49736518
Alignment:
| Q |
25 |
aaggggtcctgtgcctttggctcctctgtgggagaaattcttcaaagggcataaagggtattactcaatttacgtgcactcgaatccatcttacaatggt |
124 |
Q |
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| T |
49736671 |
aaggggtgctgtgtttttggcacctttgtgggaacaatttttcaaaggacatgaagtgtattactcaatttatgtgcattctaatccttcttataatgga |
49736572 |
T |
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| Q |
125 |
tctgaagtggagagtcctgtgtttcatgataggagaattcccagtaaggttagt |
178 |
Q |
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| T |
49736571 |
tcacaccctgagagccctgtttttcacggtagaagaattcctagtaaggttagt |
49736518 |
T |
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