View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_12 (Length: 214)
Name: NF16582_low_12
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 54881247 - 54881071
Alignment:
| Q |
13 |
cagagagaagaaacctgttatgtttctgtgtatgttcatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaa |
112 |
Q |
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| T |
54881247 |
cagagagaagaaacctgttatgtttctgtgtatgttgatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaa |
54881148 |
T |
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| Q |
113 |
tagatatccacgcctctcctgcaacnnnnnnncgcacgatattatttattattaattaattaaagaccattttaaaacgtggttag |
198 |
Q |
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| T |
54881147 |
tagatatccacgcctctcctgcaac-aaaaaacgcaagatattatt--------attaattaaagaccattttaaaacgtggttag |
54881071 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 26846622 - 26846544
Alignment:
| Q |
58 |
catggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaa |
136 |
Q |
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| T |
26846622 |
catggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaatagatatgcacgcctctcctgcaa |
26846544 |
T |
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