View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16582_low_13 (Length: 204)
Name: NF16582_low_13
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_13 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 18165937 - 18165773
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18165937 |
tagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttctcccaagttcat |
18165838 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca |
165 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18165837 |
gatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactccaca |
18165773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 19465134 - 19464970
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19465134 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagttcat |
19465035 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca |
165 |
Q |
| |
|
| || ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
19465034 |
gttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagcctattactccaca |
19464970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 19414965 - 19414796
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
19414965 |
tagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattcat |
19414866 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
|| ||| ||||| ||| || |||| ||| ||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
19414865 |
gactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttc |
19414796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 19437739 - 19437570
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19437739 |
tagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagttcat |
19437640 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
| || |||||| ||| |||||||||| ||||| || ||| ||||| | ||||||||||||||||||| |
|
|
| T |
19437639 |
ggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaacctattactccacaggttc |
19437570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 18147611 - 18147442
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18147611 |
tagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagttcat |
18147512 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
|||| |||||| ||| | | |||||||| ||||| || ||| || || | ||||||||||||||||||| |
|
|
| T |
18147511 |
gatttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacaggttc |
18147442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 18873100 - 18873266
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
18873100 |
tcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttctcccaaattcaagat |
18873199 |
T |
|
| Q |
104 |
tctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
||| || ||| | | ||||| ||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18873200 |
ctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttc |
18873266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 25463828 - 25463667
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgat |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| | ||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25463828 |
tcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctcccaagttcatgat |
25463729 |
T |
|
| Q |
104 |
tctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca |
165 |
Q |
| |
|
| |||||| || ||| ||||| ||| | | ||||||||| |||||||||||| |||||| |
|
|
| T |
25463728 |
ttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccaca |
25463667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 18109220 - 18109052
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
18109220 |
tagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagttcat |
18109121 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt |
169 |
Q |
| |
|
|||| |||||| || ||| ||||| ||| | ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
18109120 |
gatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt |
18109052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 19376403 - 19376234
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19376403 |
tagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttctcccaaattcaa |
19376304 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
|| | |||||| || || ||||| ||| | ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
19376303 |
gaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggttc |
19376234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17950613 - 17950445
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||||||| |||||||| | |||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
17950613 |
tagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagttcat |
17950514 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt |
169 |
Q |
| |
|
|||| |||||| || ||| ||||| ||| | ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
17950513 |
gatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt |
17950445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17942735 - 17942634
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
17942735 |
tagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttctcccaaattcat |
17942636 |
T |
|
| Q |
101 |
ga |
102 |
Q |
| |
|
|| |
|
|
| T |
17942635 |
ga |
17942634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 19334790 - 19334621
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| || || |||||||||||||||| |||||||| ||||||||||||||||||||||||| || || |
|
|
| T |
19334790 |
tagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaaatttat |
19334691 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
|| ||||||||| ||| ||| ||||| ||| | ||||||||| || |||||||||||||| |||||| |
|
|
| T |
19334690 |
gactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc |
19334621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 16677986 - 16677895
Alignment:
| Q |
6 |
ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt |
97 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16677986 |
ccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttctcctaagtt |
16677895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19400507 - 19400413
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag |
95 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19400507 |
tagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag |
19400413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 14895612 - 14895703
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag |
95 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
14895612 |
tcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttctcccaag |
14895703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 18104125 - 18103962
Alignment:
| Q |
3 |
gtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga |
102 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
18104125 |
gtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctacgttcatgg |
18104026 |
T |
|
| Q |
103 |
ttctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacag |
166 |
Q |
| |
|
| |||||| ||||| |||||||||| ||||| || || || || | ||||||||||||||| |
|
|
| T |
18104025 |
tctgcaattgtttcaagttagagaagtacaatggaagtttccccgacaacctattactccacag |
18103962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 19381671 - 19381573
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||| ||| | | ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19381671 |
tcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttctcccaaattcatga |
19381573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 19393930 - 19393761
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||| ||||||||||| || |||||||||||||||||| |||||||||||| |||| | ||||||| |||||||||||||||||| |||||| ||||| |
|
|
| T |
19393930 |
tagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttcccaaattcat |
19393831 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
||| |||||| || ||| ||||| || |||| ||||||||| || ||| |||||||||| |||||| |
|
|
| T |
19393830 |
gatctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc |
19393761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 19354493 - 19354396
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
19354493 |
tcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagctcccaagttcatg |
19354396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 19425468 - 19425309
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||| | | ||||||||| |||| ||||||| |||||||||||| |||| |
|
|
| T |
19425468 |
tagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatcat |
19425369 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattact |
160 |
Q |
| |
|
||| |||||| ||| ||| ||||| |||| | |||||||| |||||| ||||||| |
|
|
| T |
19425368 |
gatctgcaattgtttccaatcagagaggtgctgtataacttcacaggatagcttattact |
19425309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 18116743 - 18116645
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga |
102 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||| | ||||| || | | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18116743 |
tcccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatga |
18116645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 18016800 - 18016703
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg |
101 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
18016800 |
tcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcattttttcccaagttcatg |
18016703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 19352170 - 19352073
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg |
101 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19352170 |
tcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttctcccaagttcatg |
19352073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19439425 - 19439359
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtat |
67 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
19439425 |
tagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat |
19439359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 17726760 - 17726924
Alignment:
| Q |
5 |
cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgatt |
104 |
Q |
| |
|
||||||||| || ||| ||| ||||||||||| |||||||| |||||||||| | ||||||| ||||||||||||||||||||||||| | ||| | |
|
|
| T |
17726760 |
cccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaataatgtgt |
17726859 |
T |
|
| Q |
105 |
ctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt |
169 |
Q |
| |
|
|||||| ||||||| ||||| ||| | ||||||||| || |||||||||||||| ||||| |
|
|
| T |
17726860 |
tgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt |
17726924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 19027989 - 19028153
Alignment:
| Q |
5 |
cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgatt |
104 |
Q |
| |
|
||||||||| || ||| ||| ||||||||||| |||||||| |||||||||| | ||||||| ||||||||||||||||||||||||| | ||| | |
|
|
| T |
19027989 |
cccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaataatgtgt |
19028088 |
T |
|
| Q |
105 |
ctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt |
169 |
Q |
| |
|
|||||| ||||||| ||||| ||| | ||||||||| || |||||||||||||| ||||| |
|
|
| T |
19028089 |
tgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt |
19028153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 19461967 - 19461867
Alignment:
| Q |
4 |
tcccttcaaattggttagctctca--atatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg |
101 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||| | ||||| || | | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19461967 |
tcccttcaaattggttacctctcagtatatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatg |
19461868 |
T |
|
| Q |
102 |
a |
102 |
Q |
| |
|
| |
|
|
| T |
19461867 |
a |
19461867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 15536311 - 15536145
Alignment:
| Q |
4 |
tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgat |
103 |
Q |
| |
|
|||||||||||| || | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15536311 |
tcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatggt |
15536212 |
T |
|
| Q |
104 |
tctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
| |||||| ||| || ||||| ||||| || ||||||||| || | |||||| ||||||||||| |
|
|
| T |
15536211 |
ttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaactattattccacaggttc |
15536145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 2709807 - 2709976
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| || | ||| |||||| |||||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
2709807 |
tagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcctaggttcat |
2709906 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc |
170 |
Q |
| |
|
| | |||| | | ||||||||| ||||| || ||||||||| ||||| |||||||||||| |||| |
|
|
| T |
2709907 |
ggcttgcaatccataccaattagagaggtgcattggaacttcaccagatagtttattactccacaagttc |
2709976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 6 - 163
Target Start/End: Complemental strand, 8460321 - 8460164
Alignment:
| Q |
6 |
ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | ||||||| | ||||| |||||||||||||||| ||||||||||||||| || ||| |
|
|
| T |
8460321 |
ccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcattt |
8460222 |
T |
|
| Q |
106 |
tcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactcca |
163 |
Q |
| |
|
|||||| ||||||| | ||| || || | |||||| || ||||||||||||||||| |
|
|
| T |
8460221 |
ccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca |
8460164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 3323 - 3487
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |||||||| | ||||| ||| |||||||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
3323 |
tagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaattcat |
3422 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca |
165 |
Q |
| |
|
|| | |||||| ||| ||| ||||| ||| | ||||||||| || ||| |||||||||||| |
|
|
| T |
3423 |
gaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca |
3487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 6184 - 6020
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |||||||| | ||||| ||| |||||||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
6184 |
tagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaattcat |
6085 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca |
165 |
Q |
| |
|
|| | |||||| ||| ||| ||||| ||| | ||||||||| || ||| |||||||||||| |
|
|
| T |
6084 |
gaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca |
6020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 2792 - 2956
Alignment:
| Q |
1 |
tagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcat |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |||||||| | ||||| ||| |||||||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
2792 |
tagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaattcat |
2891 |
T |
|
| Q |
101 |
gattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca |
165 |
Q |
| |
|
|| | |||||| ||| ||| ||||| ||| | ||||||||| || ||| |||||||||||| |
|
|
| T |
2892 |
gaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca |
2956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 21400 - 21304
Alignment:
| Q |
6 |
ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga |
102 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| | ||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
21400 |
ccttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaaattcatga |
21304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 13666190 - 13666297
Alignment:
| Q |
22 |
ctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattctcaattggttcaaatt |
121 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |||| ||||| |||||||||| ||||||||||||||| ||||||||| || ||| || ||||| || |
|
|
| T |
13666190 |
ctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttctcctaagttcatggtttgcaactgtttcaagtt |
13666289 |
T |
|
| Q |
122 |
agagaagt |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
13666290 |
agagaagt |
13666297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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