View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_3 (Length: 473)
Name: NF16582_low_3
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 34571708 - 34572158
Alignment:
| Q |
10 |
catataaacacataaaaaatgtggaaactactgtgaaattccagaagtatgtaattgcctgccaccaattccactggctctctgtctgcaaagttgccaa |
109 |
Q |
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| T |
34571708 |
catataaacacataaaaaatgtggaaactactgtgaaattccagaagtatgtaattgcctgccaccaattccactggctctctgtctgcaaagttgccaa |
34571807 |
T |
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| Q |
110 |
caaatgttctttgtttatcaaatcctccttatctagcaccttgaacctctgagcaagtaggttagcaaactgatcaaaactctccttcaaaccttgttta |
209 |
Q |
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| T |
34571808 |
caaatgttctttgtttatcaaatcctccttatctagcaccttgaacctctgagcaagtaggttagcaaactgatcaaaactctccttcaaaccttgttta |
34571907 |
T |
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| Q |
210 |
gccccattctctatcacacctttcatcattgtgctttgtaggaaaaccattccccacgttatcacaagatgtgaggattcctttacacaagacacatctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571908 |
gccccattctctatcacacctttcatcattgtgctttgtaggaaaaccattccccacgttatcacaagatgtgaggattcctttacacaagacacatctt |
34572007 |
T |
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| Q |
310 |
cgccaggcattatcttgtaaagaatttcgacctgaaatgaattcccataaggaacctcaggggtgcatacactaacaagtacatcaaattcatctttagt |
409 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572008 |
cgccaggcattatcttgtaaagaatttcgacccgaaatgaattcccataaggaacctcaggggtgcatacactaacaagtacatcaaattcatctttagt |
34572107 |
T |
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| Q |
410 |
cgctctaatataggtttgttcctcggtggtattgagagctttaaccaattt |
460 |
Q |
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| T |
34572108 |
cgctctaatataggtttgttcctcagtggtattgagagctttaaccaattt |
34572158 |
T |
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