View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_4 (Length: 438)
Name: NF16582_low_4
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 3221432 - 3221859
Alignment:
| Q |
1 |
tgaaacactcgtcatttggattggatttgatcagtttgaatcgctcatcatttctctagctagnnnnnnnnn-cttatcgtatataacatagcactacaa |
99 |
Q |
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|||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
3221432 |
tgaaacactcgtcatttgaattggatttgatcagtttaaaacgctcgtcatttctctagctaattttttttatcttatcgtatataacagagcactacaa |
3221531 |
T |
|
| Q |
100 |
tttaagagttgaaaagtttatgatgcatcatgaattgaagtaataaaa-ttagaatagtatgaatggggaaaattataccaaaaatttgatttaattacg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
3221532 |
tttaagagttgaaaagtttatgatgcatcatgaattgaaataataaaaattagaatagcatgaatggggaaaattataccaaaaatttgatttaattatg |
3221631 |
T |
|
| Q |
199 |
acaaatgtaagggatatgcactgcccgtccatctaagggttagattactaaagctttaacttc-aagttcaccaacacaattttatttttcattagtttt |
297 |
Q |
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|||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3221632 |
acaaatgtaagggatatgcaatgtccgtccatctaaggattaggttactaaagctttaacttccaagttcaccaacacaattttatttttcattagtttt |
3221731 |
T |
|
| Q |
298 |
gatcaacgaattatagacaacatattcaaacaaaaaggatccatgttttaaaatttcctttaaattccaccaaccattgaaaattattgaaccgggtccg |
397 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221732 |
gatcaacgaattatagactacatattcaaacaaaaaggatccatgttttaaaatttcctttaaattccaccaaccattgaaaattattgaaccgggtccg |
3221831 |
T |
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| Q |
398 |
ggtaaaagttttaacataattgttgctg |
425 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
3221832 |
ggtaaaagttttaacataattgttgctg |
3221859 |
T |
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