View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_5 (Length: 391)
Name: NF16582_low_5
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 349
Target Start/End: Complemental strand, 3214673 - 3214331
Alignment:
| Q |
5 |
aattatatttctatgtatattgaattacaattcatgaaggtctcttgcatatatagcactgagatccttacctactatagcaggttacaatagtgacatg |
104 |
Q |
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| T |
3214673 |
aattatatttctatgtat--tgaattacaattgatgaaggtctcttgcttatatagcactgagatccttacctgctatagcaggttacaatagtgacatg |
3214576 |
T |
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| Q |
105 |
tgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttcttatactctaatacaaactgatcaaatccaatccaacaaaaaagcggg |
204 |
Q |
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||| ||||||||||| || |||||||||||||||| ||||||||||| ||||| | |||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
3214575 |
tgttagttagttacaactgtatcttaatggatctaactaagcctaatacttcttttgctctaatacaaactaatcaaatccaatccaacaagaaagcggg |
3214476 |
T |
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| Q |
205 |
tctgaacaaaaggcaatgatctacctactatattatggacacgctctagaggcacatgtaagcaagtcttgagacggaatcaggaccgtatgatgataat |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3214475 |
tctgaacaaaaggcaatgatctaccgactatattatggacacgctctagaggcacatgtaagcaagtcttgagacggaatcaggaccgtatgatgataat |
3214376 |
T |
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| Q |
305 |
cacatcatgatttataagcaattgcctcgaatgatagttgctcaa |
349 |
Q |
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| T |
3214375 |
cacatcatgatttataagcaattgcctcgaatgatagttgttcaa |
3214331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 3220048 - 3219940
Alignment:
| Q |
61 |
cactgagatccttacctactatagcaggttacaatagtgacatgtgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttcttat |
160 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
3220048 |
cactgagatccttacctgctatagcaggttgcaatagtgacatgtgttagttaattacagttgtatcttaatagatctaactaagcctaatagttcttat |
3219949 |
T |
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| Q |
161 |
actctaata |
169 |
Q |
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||||||||| |
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| T |
3219948 |
actctaata |
3219940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 3221380 - 3221320
Alignment:
| Q |
5 |
aattatatttctatgtatattgaattacaattcatgaaggtctcttgcatatatagcactgag |
67 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
3221380 |
aattatatttctatgtat--tgaattacaattgatgaaggtctcttgcttatatagcactgag |
3221320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 376
Target Start/End: Complemental strand, 3214269 - 3214239
Alignment:
| Q |
346 |
tcaaaatacatacacattccctacacttcat |
376 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3214269 |
tcaaaatacatacacattccctacacttcat |
3214239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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