View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_6 (Length: 377)
Name: NF16582_low_6
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 357
Target Start/End: Complemental strand, 8574978 - 8574854
Alignment:
| Q |
230 |
tccttgattttgtaggttgtgttttttgtttatttcttgcttgataagacatgctccaaataagagtcattgttttctgttagcacataaaactgctata |
329 |
Q |
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| T |
8574978 |
tccttgattttgttggttgtgtt----gtttatttcatgtttgataagccatgcaccaaataagagacattctgttctgttagcacataaaactgcttta |
8574883 |
T |
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| Q |
330 |
tg-atttaccattcaaagtaattgtagta |
357 |
Q |
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| T |
8574882 |
tgtttttagcattcaaaataattgcagta |
8574854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 8569289 - 8569244
Alignment:
| Q |
10 |
atgaacaagatcaacaaaggttactctgatgaggaaagtgattcgg |
55 |
Q |
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| T |
8569289 |
atgaacaagatcaacaaaggtgactctgatgagaaaagtgattcgg |
8569244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 8608894 - 8608852
Alignment:
| Q |
11 |
tgaacaagatcaacaaaggttactctgatgaggaaagtgattc |
53 |
Q |
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| T |
8608894 |
tgaacaagattaataaaggttactctgatgaggaaagtgattc |
8608852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 8575275 - 8575235
Alignment:
| Q |
12 |
gaacaagatcaacaaaggttactctgatgaggaaagtgatt |
52 |
Q |
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| T |
8575275 |
gaacaagattaacaaaggctactctgatgaggaaagtgatt |
8575235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 8544611 - 8544569
Alignment:
| Q |
10 |
atgaacaagatcaacaaaggttactctgatgaggaaagtgatt |
52 |
Q |
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| T |
8544611 |
atgaacaagatcaaccaaggttaatctgatggggaaagtgatt |
8544569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 12527248 - 12527179
Alignment:
| Q |
263 |
ttcttgcttgataagacatgctccaaat--aagagtcattgttttctgttagcacataaaactgctatat |
330 |
Q |
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| T |
12527248 |
ttcttgtttgataagccatgctccaaatgaaagaacaattgtgttctgttagcacataaaactactatat |
12527179 |
T |
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