View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_7 (Length: 368)
Name: NF16582_low_7
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 2467678 - 2468028
Alignment:
| Q |
1 |
attagaaatgcaatcacactttttctcacattcgctccattcgtttccaaaaccatttaagagccagcacttttcatctttcaccacctcacttatatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2467678 |
attagaaatgcaatcacactttttctcacattcgctccattcgtttccaaaaccatttaagagccagcactttttatctttcaccacctcacttatatcc |
2467777 |
T |
|
| Q |
101 |
tcttccattttcccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcgggctacaacggtaatttcctgaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2467778 |
tcttccatttttccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcggtctacaacggtaatttcctgaa |
2467877 |
T |
|
| Q |
201 |
cctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467878 |
cctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaa |
2467977 |
T |
|
| Q |
301 |
aattccgattctcaatgccaattggcaacacagaatgtgtcttctgatgat |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467978 |
aattccgattctcaatgccaattggcaacacagaatgtgtcttctgatgat |
2468028 |
T |
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