View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16582_low_8 (Length: 252)
Name: NF16582_low_8
Description: NF16582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16582_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 6291369 - 6291510
Alignment:
| Q |
15 |
aatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcctagaatc |
114 |
Q |
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| T |
6291369 |
aatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcctagaatc |
6291468 |
T |
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| Q |
115 |
ttttgtcttccttcctcacaatgacaatattcatcacaacaa |
156 |
Q |
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| T |
6291469 |
ttttctcttccttcctcacaatgacaatattcatcacaacaa |
6291510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 6291574 - 6291606
Alignment:
| Q |
220 |
ccttaaatttttaactctaagaattactataac |
252 |
Q |
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| T |
6291574 |
ccttaaatttttaactctaagaattactataac |
6291606 |
T |
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