View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16583_high_1 (Length: 580)
Name: NF16583_high_1
Description: NF16583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16583_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 11 - 563
Target Start/End: Complemental strand, 36076047 - 36075513
Alignment:
| Q |
11 |
gaatggtgaaatggaaatggagaatgtgattgtttcggtggaaaacggagttggtggagttttgtaagtgagcgattcaaactacaaagtgagaggtgca |
110 |
Q |
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| T |
36076047 |
gaatggtgaaatggaaatggagaatgtgattgtttcggtggaaaacggagttggtggagttttgtaagtgagcgattcaaactacaaagtgagaggtgca |
36075948 |
T |
|
| Q |
111 |
tattttaggttgattgaagaagaaaatgaggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaagtgcttcgtt |
210 |
Q |
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| T |
36075947 |
tattttaggttgattgaagaagaaaatgaggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaagtg------- |
36075855 |
T |
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| Q |
211 |
attgtgttatggttgtggtaaactcgaaactattaatcacatcttt-caaatatggttgttggcaataaacgagtcattctattcaatttttcagattgt |
309 |
Q |
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| T |
36075854 |
------ttatggttgtggtaaactcgaaactattaatcacatcttttcaattatggttgttggcaataaacgagtcattctattcaattattcagattgt |
36075761 |
T |
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| Q |
310 |
gtgaaaaaactgaagatttatgttcagttgtgtatgtatgtgggaaatgtatcccttaagatcgagcttataaatccaagaccagtggctagaaatgtat |
409 |
Q |
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| T |
36075760 |
gtgaaaaaactgaagatttatgttcagttgtgtatgtatgtgggaaatgtatccgttaagatcgagcttataaatccaagaccagtggctagaaatgtat |
36075661 |
T |
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| Q |
410 |
caagttctcttaaattttgaggttctaaatccaagaccagcagaaataagcatcaatttcatcattattatggttgagattatgaggcatttaactttct |
509 |
Q |
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| T |
36075660 |
caagttctcttaaattttgaggttctaaatccaagaccagcaga---aagcatcaatttcatcattattatggttgag---ataaggcatttaactttct |
36075567 |
T |
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| Q |
510 |
ttggcagtataatatccattccatgctccatatcatggtatcatcaatatcaac |
563 |
Q |
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| T |
36075566 |
ttggcagtataatatccattccatgctccatatcatggtatcatcaaaatcaac |
36075513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 4217331 - 4217361
Alignment:
| Q |
157 |
aaagaggtttggaatcctttgatccctttga |
187 |
Q |
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| T |
4217331 |
aaagaggtttggaatcctttgatccctttga |
4217361 |
T |
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